Factsheet for Zm00001d053006_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27839	Sorghum	nucleus, plastid	77.59	73.11
Zm00001d004822_P001	Maize	nucleus, plastid	54.95	66.76
Os11t0169400-01	Rice	nucleus	58.49	58.35
TraesCS4A01G207500.1	Wheat	nucleus	56.84	55.53
HORVU4Hr1G019890.1	Barley	nucleus	56.13	55.35
TraesCS4B01G111000.1	Wheat	nucleus	56.84	55.15
TraesCS4D01G108700.1	Wheat	nucleus	56.84	55.15
GSMUA_Achr9P00350_001	Banana	nucleus	35.85	53.33
PGSC0003DMT400074652	Potato	plastid	36.56	48.14
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	39.39	43.38
KRH64726	Soybean	nucleus	41.27	41.08
Solyc11g013220.1.1	Tomato	nucleus	38.92	40.94
KRH53192	Soybean	nucleus	40.33	40.43
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	31.84	40.06
Zm00001d026684_P001	Maize	nucleus	38.92	39.38
VIT_18s0001g03670.t01	Wine grape	nucleus	42.22	36.61
Zm00001d004497_P001	Maize	nucleus, plastid	32.55	30.07
Zm00001d024883_P001	Maize	nucleus	33.96	28.12
Zm00001d012605_P001	Maize	nucleus	30.42	25.75
Zm00001d047106_P001	Maize	plastid	17.92	25.68
Zm00001d043243_P001	Maize	nucleus	29.95	25.15
Zm00001d029869_P001	Maize	mitochondrion	17.92	24.76
Zm00001d017504_P001	Maize	mitochondrion	16.98	24.57
Zm00001d014485_P001	Maize	nucleus, plastid	24.53	23.74
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	25.47	23.38

Protein Annotations

EMBL:BT033637	EnsemblPlants:Zm00001d053006_P001	EnsemblPlants:Zm00001d053006_T001	EnsemblPlantsGene:Zm00001d053006	EntrezGene:100191534	Gene3D:3.90.228.10
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681
PANTHER:PTHR31681:SF21	PFscan:PS50157	ProteinID:AQK58535.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399
UniParc:UPI00017B6239	UniProt:B4F949	MapMan:15.5.15	:	:	:

Description

C2H2-like zinc finger protein

Coordinates

chr4:+:208792099..208794207

Molecular Weight (calculated)

45800.5 Da

IEP (calculated)

9.142

GRAVY (calculated)

-0.502

Length

424 amino acids

Sequence
(BLAST)

001: MSRGAEKKNW PPSRSSSSSS SSPTSSWVAS RSMAGFYRYP SSTRTSGKDR TQPPPAPAAP TQQQGDKSSS KKKRRSISIG RSITCAGSIC STKESSVMSR
101: DRRGASSRSL RAPYVDVDVN DASAAAISAT SSFNSETTVA STTTVTSSSS SSSVGTSFRG VHIRKLSGCY ECHSVFDPRS FGAAAFPCAD CDEVFAKAES
201: LELHRATRHA VWELGPEDTS RNIVEIIFQS SWPAGKQQQA PVCKIERVLK VQSSDRTLER FEQYKESVRE RASSDRGRKN NPRCVADGNE LLRFHCTTFT
301: CSLGLAGSTA LCRAPPCKLC AIVRDGFRVD DDGKIATMGT SGRAHDMAQA VLSESDGDKR AMLVCRVVAG RVKKKASDEK KPSEDSGFDS VSPSTEGVCS
401: DLDQLFVFNQ RAILPCFVVI YSGY

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.