Factsheet for Zm00001d012605_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043243_P001	Maize	nucleus	86.83	86.14
EES03733	Sorghum	nucleus	87.43	83.75
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	77.45	80.0
TraesCS3D01G317900.1	Wheat	nucleus	76.45	79.63
HORVU3Hr1G077490.2	Barley	nucleus	76.65	79.18
TraesCS3B01G353600.1	Wheat	nucleus	75.85	78.19
KRH25897	Soybean	cytosol	27.15	76.4
TraesCS3A01G324600.1	Wheat	nucleus	75.65	74.75
GSMUA_Achr6P19070_001	Banana	cytosol	18.76	71.21
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	59.48	69.46
VIT_00s1356g00010.t01	Wine grape	cytosol	52.89	68.65
GSMUA_Achr6P24320_001	Banana	cytosol	45.51	67.66
GSMUA_Achr9P29950_001	Banana	cytosol	49.7	66.4
KRH55605	Soybean	cytosol	58.08	65.99
KRH22216	Soybean	cytosol, plastid	57.48	65.6
GSMUA_Achr1P08590_001	Banana	nucleus	54.49	65.47
GSMUA_Achr9P24720_001	Banana	cytosol	47.11	65.37
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	56.09	65.35
KRH27121	Soybean	cytosol, plastid	56.69	65.14
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	55.49	65.11
PGSC0003DMT400055929	Potato	cytosol	53.09	63.79
GSMUA_AchrUn_...	Banana	cytosol	45.51	63.33
Solyc02g079920.2.1	Tomato	cytosol	53.09	63.18
CDY29286	Canola	nucleus	50.5	61.56
CDY06635	Canola	nucleus	53.29	60.68
CDY28761	Canola	nucleus	54.09	60.63
Bra026366.1-P	Field mustard	nucleus	50.5	59.39
CDX89265	Canola	nucleus	50.5	59.25
AT4G27240.1	Thale cress	nucleus	50.1	58.24
Bra022735.1-P	Field mustard	nucleus	54.89	58.14
AT5G54630.1	Thale cress	nucleus	54.69	58.05
CDY18344	Canola	nucleus	50.7	56.07
GSMUA_Achr6P19060_001	Banana	nucleus	23.75	52.65
Zm00001d014485_P001	Maize	nucleus, plastid	39.12	44.75
AT1G11490.2	Thale cress	mitochondrion	31.94	43.84
Bra019849.1-P	Field mustard	cytosol, mitochondrion	30.34	42.46
CDX97964	Canola	cytosol	30.34	42.34
CDY49785	Canola	cytosol	30.14	42.18
KRH10693	Soybean	nucleus	30.54	38.44
KRH21644	Soybean	nucleus	29.54	37.09
KRH58632	Soybean	nucleus	26.75	37.02
Zm00001d026684_P001	Maize	nucleus	29.54	35.32
Zm00001d029869_P001	Maize	mitochondrion	19.16	31.27
Zm00001d047106_P001	Maize	plastid	18.16	30.74
Zm00001d053006_P001	Maize	nucleus	25.75	30.42
Zm00001d017504_P001	Maize	mitochondrion	17.17	29.35
Zm00001d004497_P001	Maize	nucleus, plastid	26.75	29.19
Zm00001d004822_P001	Maize	nucleus, plastid	19.36	27.79
Zm00001d024883_P001	Maize	nucleus	28.34	27.73
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	22.36	24.24

Protein Annotations

EMBL:FM252125	EnsemblPlants:Zm00001d012605_P001	EnsemblPlants:Zm00001d012605_T001	EnsemblPlantsGene:Zm00001d012605	EntrezGene:100280447	Gene3D:3.90.228.10
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681
PANTHER:PTHR31681:SF19	PFscan:PS50157	ProteinID:AQK99939.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399
UniParc:UPI000188320A	UniProt:B7VCC0	MapMan:15.5.15	:	:	:

Description

MRP interacting1 MRP interacting1

Coordinates

chr8:+:177084651..177090378

Molecular Weight (calculated)

51838.8 Da

IEP (calculated)

9.673

GRAVY (calculated)

-0.249

Length

501 amino acids

Sequence
(BLAST)

001: MGERRRRAST ASLGGGGGAG GSGAVPARNE EDKAAEPPPP TLWFALKRSL HCRSELSEVH VPRANKASGP VVASGGHLSS IVTKRASARS GCSRSIANLR
101: DVIHGSKRHP GQPPSCSPRS IGSSEFLNPI AHEVVLSTNS RCELKITGFG GCGGLAAVGT GAAAAHDACG GGDGGVVSSF VGTLRPGTPG PAWAGAGHGL
201: PCSGSVRGGV RCTPPRSPCV LLERNGSVVS GHRASSCEET AKDGGAGKGS GGLSCHRCGE QFSKWEALEE HHLSRHAVTE LVEGDSSRKI VEIICRTSLL
301: KSESSCVRIE RVFKVHNTQR TLSRFEEYRE AVKLRASKLP KKHPRCLADG NELLRFHGTT LSCALGGGGG GGGGSSRLCA SDKCAVCRII RHGFSGRKEG
401: KTGVGVFTTS TSGRAFESIE AAGADGAGAG SVSGTTRRAL LVCRVIAGRV HKPLDNLKEF AGQTMGFDSL AGKVGPYSNI EELYLLNPRA LLPCFVVICK
501: P

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.