Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28761 | Canola | nucleus | 83.47 | 88.14 |
| CDY06635 | Canola | nucleus | 81.99 | 87.95 |
| Bra022735.1-P | Field mustard | nucleus | 86.02 | 85.84 |
| CDY18344 | Canola | nucleus | 80.3 | 83.66 |
| KRH25897 | Soybean | cytosol | 29.45 | 78.09 |
| AT4G27240.1 | Thale cress | nucleus | 69.28 | 75.87 |
| KRH55605 | Soybean | cytosol | 66.53 | 71.2 |
| VIT_19s0014g05000.t01 | Wine grape | cytosol, plastid | 64.41 | 70.86 |
| KRH22216 | Soybean | cytosol, plastid | 65.68 | 70.61 |
| KRH27121 | Soybean | cytosol, plastid | 65.04 | 70.41 |
| PGSC0003DMT400049491 | Potato | cytosol, nucleus, peroxisome | 60.38 | 66.28 |
| Solyc07g063970.2.1 | Tomato | cytosol, nucleus, peroxisome | 59.53 | 65.81 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 58.69 | 57.59 |
| HORVU3Hr1G077490.2 | Barley | nucleus | 58.26 | 56.7 |
| Os01t0785900-01 | Rice | mitochondrion, nucleus, peroxisome, plastid | 57.63 | 56.08 |
| TraesCS3B01G353600.1 | Wheat | nucleus | 57.63 | 55.97 |
| Zm00001d012605_P001 | Maize | nucleus | 58.05 | 54.69 |
| Zm00001d043243_P001 | Maize | nucleus | 58.26 | 54.46 |
| TraesCS3A01G324600.1 | Wheat | nucleus | 58.47 | 54.44 |
| EES03733 | Sorghum | nucleus | 58.47 | 52.77 |
| Os06t0683000-01 | Rice | cytosol, nucleus, plastid | 47.25 | 47.96 |
| EER88828 | Sorghum | cytosol | 38.98 | 42.59 |
| AT1G11490.2 | Thale cress | mitochondrion | 32.84 | 42.47 |
| Zm00001d014485_P001 | Maize | nucleus, plastid | 38.98 | 42.01 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 20.34 | 36.36 |
| AT1G75710.1 | Thale cress | nucleus | 33.9 | 34.63 |
| AT1G62520.1 | Thale cress | nucleus | 20.34 | 34.29 |
| AT4G12450.1 | Thale cress | cytosol | 19.92 | 33.94 |
| AT2G29660.1 | Thale cress | golgi, plasma membrane | 22.25 | 28.15 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.90.228.10 | EntrezGene:835552 | ProteinID:AED96520.1 | ArrayExpress:AT5G54630 | EnsemblPlantsGene:AT5G54630 |
| RefSeq:AT5G54630 | TAIR:AT5G54630 | RefSeq:AT5G54630-TAIR-G | EnsemblPlants:AT5G54630.1 | TAIR:AT5G54630.1 | EMBL:AY045630 |
| EMBL:AY124867 | ProteinID:BAB09342.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR013087 | RefSeq:NP_200274.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00028 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF19 | UniProt:Q9FIU1 | SUPFAM:SSF56399 |
| UniParc:UPI00000A2904 | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
Coordinates
chr5:-:22192367..22194559
Molecular Weight (calculated)
50901.8 Da
IEP (calculated)
9.837
GRAVY (calculated)
-0.447
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.