Factsheet for Os06t0683000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25897	Soybean	cytosol	27.1	70.79
GSMUA_Achr6P19070_001	Banana	cytosol	18.71	65.91
VIT_00s1356g00010.t01	Wine grape	cytosol	47.96	57.77
GSMUA_Achr6P24320_001	Banana	cytosol	41.51	57.27
GSMUA_Achr9P29950_001	Banana	cytosol	44.95	55.73
GSMUA_AchrUn_...	Banana	cytosol	43.01	55.56
GSMUA_Achr1P08590_001	Banana	nucleus	47.96	53.48
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	49.03	53.15
KRH55605	Soybean	cytosol	50.32	53.06
Zm00001d014485_P001	Maize	nucleus, plastid	49.68	52.74
KRH22216	Soybean	cytosol, plastid	49.68	52.62
KRH27121	Soybean	cytosol, plastid	49.25	52.52
EER88828	Sorghum	cytosol	48.6	52.31
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	47.96	51.86
GSMUA_Achr9P24720_001	Banana	cytosol	40.0	51.52
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	47.31	51.52
PGSC0003DMT400055929	Potato	cytosol	46.02	51.32
CDY29286	Canola	nucleus	44.73	50.61
Solyc02g079920.2.1	Tomato	cytosol	45.81	50.59
CDY06635	Canola	nucleus	47.1	49.77
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	51.61	49.48
CDY28761	Canola	nucleus	47.53	49.44
AT4G27240.1	Thale cress	nucleus	45.59	49.19
Bra026366.1-P	Field mustard	nucleus	44.95	49.06
CDX89265	Canola	nucleus	44.95	48.95
CDY18344	Canola	nucleus	46.45	47.68
AT5G54630.1	Thale cress	nucleus	47.96	47.25
Bra022735.1-P	Field mustard	nucleus	47.96	47.15
GSMUA_Achr6P19060_001	Banana	nucleus	21.29	43.81
AT1G11490.2	Thale cress	mitochondrion	30.54	38.9
CDX97964	Canola	cytosol	29.89	38.72
Bra019849.1-P	Field mustard	cytosol, mitochondrion	29.68	38.55
CDY49785	Canola	cytosol	29.25	37.99
Os10t0554001-01	Rice	cytosol	14.84	37.91
KRH10693	Soybean	nucleus	30.75	35.93
KRH58632	Soybean	nucleus	27.1	34.81
KRH21644	Soybean	nucleus	29.03	33.83
Os11t0169400-01	Rice	nucleus	25.16	27.53
Os04t0115500-00	Rice	nucleus	28.17	27.29
Os02t0661600-00	Rice	mitochondrion	17.2	26.14
Os04t0690100-01	Rice	nucleus	27.53	25.7
Os03t0264600-00	Rice	endoplasmic reticulum, nucleus	22.15	22.1

Protein Annotations

MapMan:15.5.15	Gene3D:3.90.228.10	EntrezGene:4341867	EMBL:AK105443	EMBL:AK120010	ProteinID:BAD45547.1
ProteinID:BAD45906.1	ProteinID:BAF20299.1	ProteinID:BAS99169.1	ProteinID:BAS99170.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	EnsemblPlantsGene:Os06g0683000	EnsemblPlants:Os06t0683000-01	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR31681	PANTHER:PTHR31681:SF7	UniProt:Q653W1	SUPFAM:SSF56399	UniParc:UPI000043A315	RefSeq:XP_015641690.1
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

Zinc finger, C2H2-like domain containing protein. (Os06t0683000-01);Zinc finger, C2H2-like domain containing protein. (Os06t0683000-02);Hypothetical conserved gene. (Os06t0683000-03)

Coordinates

chr6:+:28467984..28471154

Molecular Weight (calculated)

49031.8 Da

IEP (calculated)

8.157

GRAVY (calculated)

-0.307

Length

465 amino acids

Sequence
(BLAST)

001: MNDISSYRLT VSSAQSLQYS AIGLSGEEGE SPEKGEMPTV WAALKKSLNC KSGDSCGVIE REESQGGVTA GKKSSSTSAA ALRRSGCSRS IANLRDVFHS
101: QYGGSRRQED AVAAAAAGEG DGGCGSPRSI GSNDVLNPVT HDVLLAARSD AKCELRISTP GRGAWAGAGG GVPFPHSPLL LRCSTTPVST RKSPSAMSPL
201: RRADDDDDNA EAPSPAPARA SCEVGIRCHR CGDRFANHDA LESHHHSRHA VTELVEGDSS RKVVEIICKA GWAKTENALG RIERVVKVHN AERSVARFEE
301: FREAVKGKAA RLSKKHPRCL ADGNELLRFH ATTLACSLGA GDSSTLCTSG SCSVCRIIRH GFSATREIKD GVGVFTTSTS KRALECIAGD GDGDEAANAG
401: VRKALLVCRV VAGRIHRPLE NLQEVAAQPG FDSVAGKVGA YASIEELYLL NPRALLPCFV VICKP

Best Arabidopsis Sequence Match ( AT4G27240.1 )
(BLAST)

001: MEASSTRSEK KKKKKTIQRE NTDTQKKKKL PSVWFSLKKS LPCKSDVSDV HIPRSKKELA PISTKRTTTS SGGGVGGRSG CSRSIANLKD VIHGNQRHLE
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P

Arabidopsis Description

At4g27240 [Source:UniProtKB/TrEMBL;Acc:O81827]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.