Factsheet for GSMUA_Achr9P29950_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P19070_001	Banana	cytosol	29.6	84.09
GSMUA_Achr6P24320_001	Banana	cytosol	59.2	65.88
GSMUA_Achr6P19060_001	Banana	nucleus	37.87	62.83
GSMUA_AchrUn_...	Banana	cytosol	58.93	61.39
GSMUA_Achr1P08590_001	Banana	nucleus	67.73	60.91
GSMUA_Achr9P24720_001	Banana	cytosol	57.6	59.83
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	67.2	51.96
TraesCS3D01G317900.1	Wheat	nucleus	65.33	50.94
TraesCS3B01G353600.1	Wheat	nucleus	65.33	50.41
HORVU3Hr1G077490.2	Barley	nucleus	64.8	50.1
Zm00001d012605_P001	Maize	nucleus	66.4	49.7
Zm00001d043243_P001	Maize	nucleus	65.6	48.71
TraesCS3A01G324600.1	Wheat	nucleus	64.8	47.93
EES03733	Sorghum	nucleus	66.67	47.8
Os06t0683000-01	Rice	cytosol, nucleus, plastid	55.73	44.95
Zm00001d014485_P001	Maize	nucleus, plastid	49.07	42.01
EER88828	Sorghum	cytosol	48.27	41.9
GSMUA_Achr11P...	Banana	cytosol	29.6	41.11
GSMUA_Achr6P17990_001	Banana	nucleus	28.0	40.86
GSMUA_Achr11P...	Banana	nucleus	26.93	38.85
GSMUA_Achr9P00350_001	Banana	nucleus	29.33	38.6
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	30.93	35.05
GSMUA_Achr7P19590_001	Banana	cytosol	7.47	32.56
GSMUA_Achr8P30300_001	Banana	nucleus	32.8	31.87
GSMUA_Achr2P10020_001	Banana	cytosol	22.13	30.97
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	31.73	30.91
GSMUA_Achr8P19240_001	Banana	nucleus	34.13	30.33
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	28.8	29.11
GSMUA_Achr7P07110_001	Banana	cytosol	21.33	28.99
GSMUA_Achr4P30380_001	Banana	cytosol	21.87	28.98
GSMUA_Achr4P27010_001	Banana	plastid	21.33	27.97
GSMUA_Achr5P15290_001	Banana	nucleus	18.93	27.95
GSMUA_Achr1P01700_001	Banana	nucleus	21.87	27.8
GSMUA_Achr11P...	Banana	nucleus	33.6	27.45
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	20.27	25.76

Protein Annotations

EnsemblPlants:GSMUA_Achr9P29950_001	EnsemblPlants:GSMUA_Achr9T29950_001	EnsemblPlantsGene:GSMUA_Achr9G29950_001	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19	ScanProsite:PS00028
SUPFAM:SSF56399	UniParc:UPI0002967BF8	UniProt:M0U4Q2	MapMan:15.5.15	:	:

Description

ZOS1-12 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G29950_001]

Coordinates

chr9:+:33421203..33423410

Molecular Weight (calculated)

41408.1 Da

IEP (calculated)

9.029

GRAVY (calculated)

-0.294

Length

375 amino acids

Sequence
(BLAST)

001: MSTLWFTLKR SLHCRSDPSD VHEPKARGPL GAILSRKTCR SGCSRSMANL RDVIHGGRRQ IERPSCCSPR SIGSSEVLNP IAHEVVLSDS GCELKITGFR
101: SHYDEGYPLW GSSLSNDVLG NDGANHFPLE ARSSAGAATP TICHRCGDQF GKWEALEAHH LSKHAVTELL EGDSSRKIVE IICKASWLKS ESSCGRLERV
201: LKVHNMQKTL TQFEEYREMV KIRASKLPKK HPRCLADGNE LLRFYGTTVC CSLGINGSSN LCTSDKCNVC RILRHGFSKR KEMKGGLGMF TTSTSRRALE
301: SVQVLEDHPS IRKALLICRV IAGRVHKPMD KLQNLAGQCG FDSVAGKVGP YASIEELYLL NARALLPCFV VICKP

Best Arabidopsis Sequence Match ( AT4G27240.1 )
(BLAST)

001: MEASSTRSEK KKKKKTIQRE NTDTQKKKKL PSVWFSLKKS LPCKSDVSDV HIPRSKKELA PISTKRTTTS SGGGVGGRSG CSRSIANLKD VIHGNQRHLE
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P

Arabidopsis Description

At4g27240 [Source:UniProtKB/TrEMBL;Acc:O81827]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.