Factsheet for GSMUA_Achr6P17990_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	70.43	67.04
GSMUA_Achr9P00350_001	Banana	nucleus	65.37	58.95
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	71.98	55.89
GSMUA_Achr11P...	Banana	nucleus	52.14	51.54
GSMUA_Achr8P30300_001	Banana	nucleus	72.37	48.19
PGSC0003DMT400074652	Potato	plastid	59.53	47.52
GSMUA_Achr7P19590_001	Banana	cytosol	15.18	45.35
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	66.54	44.42
GSMUA_Achr6P19070_001	Banana	cytosol	21.01	40.91
KRH64726	Soybean	nucleus	64.2	38.73
KRH53192	Soybean	nucleus	63.42	38.53
Solyc11g013220.1.1	Tomato	nucleus	60.31	38.46
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	49.81	37.98
VIT_18s0001g03670.t01	Wine grape	nucleus	65.76	34.56
GSMUA_Achr8P19240_001	Banana	nucleus	50.97	31.04
GSMUA_Achr5P15290_001	Banana	nucleus	28.79	29.13
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	42.02	29.11
GSMUA_Achr11P...	Banana	nucleus	51.36	28.76
GSMUA_AchrUn_...	Banana	cytosol	39.69	28.33
GSMUA_Achr9P29950_001	Banana	cytosol	40.86	28.0
GSMUA_Achr6P24320_001	Banana	cytosol	36.58	27.89
GSMUA_Achr1P08590_001	Banana	nucleus	45.14	27.82
GSMUA_Achr9P24720_001	Banana	cytosol	36.97	26.32
GSMUA_Achr7P07110_001	Banana	cytosol	27.63	25.72
GSMUA_Achr2P10020_001	Banana	cytosol	26.46	25.37
GSMUA_Achr4P30380_001	Banana	cytosol	27.63	25.09
GSMUA_Achr1P01700_001	Banana	nucleus	28.79	25.08
GSMUA_Achr4P27010_001	Banana	plastid	27.63	24.83
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	26.85	23.39
GSMUA_Achr6P19060_001	Banana	nucleus	14.01	15.93

Protein Annotations

EnsemblPlants:GSMUA_Achr6P17990_001	EnsemblPlants:GSMUA_Achr6T17990_001	EnsemblPlantsGene:GSMUA_Achr6G17990_001	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21	PFscan:PS50157
ScanProsite:PS00028	SUPFAM:SSF56399	UniParc:UPI0002950211	UniProt:M0T7Z7	MapMan:15.5.15	:

Description

ZOS4-14 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G17990_001]

Coordinates

chr6:-:12111111..12112289

Molecular Weight (calculated)

28338.9 Da

IEP (calculated)

7.613

GRAVY (calculated)

-0.235

Length

257 amino acids

Sequence
(BLAST)

001: MHLRGFSGCY ECHLTADPLI GPSRDASTRL TISPCPDCGE IFMKPDDLDL HQRAMHAASE LSAEDTSRKI IEIIFRSSWL DKQASICKID RILKVHNTQK
101: TISRFEDYRD SIKSSCNRLQ NKHPRCVADG NELLRFHCTT LACSLGLDGS TNLCRSIPRC SVCSILRDGF GVDEFGKIQT MATSGGAHAA AQVSSEGEKR
201: AMLVCRVIAG RVKKSRDATE EYDSVAGPAA THSNLDELFV FHPNAILPCF VVLYRGS

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.