Factsheet for GSMUA_Achr6P19070_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
peroxisome 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P29950_001	Banana	cytosol	84.09	29.6
GSMUA_Achr6P24320_001	Banana	cytosol	72.73	28.49
GSMUA_Achr9P24720_001	Banana	cytosol	72.73	26.59
GSMUA_AchrUn_...	Banana	cytosol	69.7	25.56
GSMUA_Achr1P08590_001	Banana	nucleus	72.73	23.02
GSMUA_Achr6P17990_001	Banana	nucleus	40.91	21.01
GSMUA_Achr11P...	Banana	nucleus	40.15	20.38
GSMUA_Achr11P...	Banana	cytosol	41.67	20.37
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	72.73	19.79
GSMUA_Achr9P00350_001	Banana	nucleus	42.42	19.65
HORVU3Hr1G077490.2	Barley	nucleus	71.21	19.38
TraesCS3D01G317900.1	Wheat	nucleus	69.7	19.13
Zm00001d012605_P001	Maize	nucleus	71.21	18.76
TraesCS3B01G353600.1	Wheat	nucleus	68.94	18.72
Os06t0683000-01	Rice	cytosol, nucleus, plastid	65.91	18.71
Zm00001d043243_P001	Maize	nucleus	69.7	18.22
EES03733	Sorghum	nucleus	71.97	18.16
EER88828	Sorghum	cytosol	59.09	18.06
TraesCS3A01G324600.1	Wheat	nucleus	68.94	17.95
Zm00001d014485_P001	Maize	nucleus, plastid	57.58	17.35
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	41.67	16.62
GSMUA_Achr5P15290_001	Banana	nucleus	31.06	16.14
GSMUA_Achr8P30300_001	Banana	nucleus	46.21	15.8
GSMUA_Achr2P10020_001	Banana	cytosol	31.82	15.67
GSMUA_Achr4P30380_001	Banana	cytosol	33.33	15.55
GSMUA_Achr7P07110_001	Banana	cytosol	31.82	15.22
GSMUA_Achr4P27010_001	Banana	plastid	31.06	14.34
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	40.15	14.29
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	40.91	14.03
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	31.06	13.9
GSMUA_Achr1P01700_001	Banana	nucleus	31.06	13.9
GSMUA_Achr8P19240_001	Banana	nucleus	43.94	13.74
GSMUA_Achr11P...	Banana	nucleus	45.45	13.07
GSMUA_Achr7P19590_001	Banana	cytosol	1.52	2.33
GSMUA_Achr6P19060_001	Banana	nucleus	2.27	1.33

Protein Annotations

EnsemblPlants:GSMUA_Achr6P19070_001	EnsemblPlants:GSMUA_Achr6T19070_001	EnsemblPlantsGene:GSMUA_Achr6G19070_001	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19
SUPFAM:SSF56399	UniParc:UPI000294D7AF	UniProt:M0T8A5	MapMan:15.5.15	:	:

Description

ZOS1-12 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G19070_001]

Coordinates

chr6:+:13277054..13277527

Molecular Weight (calculated)

14713.2 Da

IEP (calculated)

10.477

GRAVY (calculated)

-0.164

Length

132 amino acids

Sequence
(BLAST)

001: MEKTRASKLP KKHPRCLADG NELLRICHIL RHGFSRKKEM KGRVGVFTTS TSGRALESIQ VIEDQPSIRK ALLICRVIAG RVHKPVDNLQ NLAGQYAFDS
101: VAGKFGPQAS IEELYLLDAR ALLPCFAVIC KR

Best Arabidopsis Sequence Match ( AT4G27240.1 )
(BLAST)

001: MEASSTRSEK KKKKKTIQRE NTDTQKKKKL PSVWFSLKKS LPCKSDVSDV HIPRSKKELA PISTKRTTTS SGGGVGGRSG CSRSIANLKD VIHGNQRHLE
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P

Arabidopsis Description

At4g27240 [Source:UniProtKB/TrEMBL;Acc:O81827]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.