Factsheet for GSMUA_Achr1P01700_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P25070_001
GSMUA_Achr7P14150_001
GSMUA_Achr7P27170_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	GSMUA_Achr7P27170_001	AT1G05410.1	21798944
AT4G12450.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr3P25070_001	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr7P14150_001	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P27010_001	Banana	plastid	76.27	78.67
GSMUA_Achr5P15290_001	Banana	nucleus	66.1	76.77
GSMUA_Achr2P10020_001	Banana	cytosol	67.46	74.25
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	73.22	73.22
GSMUA_Achr4P30380_001	Banana	cytosol	68.47	71.38
GSMUA_Achr7P07110_001	Banana	cytosol	59.66	63.77
Os10t0554001-01	Rice	cytosol	36.95	59.89
TraesCS5A01G536800.1	Wheat	cytosol	35.59	54.69
TraesCS6A01G248100.1	Wheat	plastid	46.78	49.82
TraesCS6D01G230200.1	Wheat	plastid	46.78	49.29
Solyc08g079010.1.1	Tomato	cytosol	26.1	48.73
TraesCS6B01G276600.1	Wheat	plastid	46.1	48.57
Bra020842.1-P	Field mustard	cytosol	42.37	48.45
CDX76365	Canola	cytosol	42.37	48.45
HORVU6Hr1G063400.2	Barley	plastid	46.1	48.4
VIT_02s0154g00220.t01	Wine grape	cytosol	46.78	48.25
CDY42181	Canola	cytosol	42.03	48.06
AT4G22560.1	Thale cress	cytosol, plastid	42.71	47.73
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	46.78	47.1
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	46.44	46.76
Zm00001d017504_P001	Maize	mitochondrion	46.44	46.76
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	46.44	46.6
Os02t0661600-00	Rice	mitochondrion	48.14	46.41
CDY63658	Canola	cytosol	43.73	46.4
CDY16714	Canola	cytosol	43.73	46.4
Bra029455.1-P	Field mustard	cytosol	43.73	46.4
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	45.42	46.37
AT4G12450.1	Thale cress	cytosol	42.71	45.49
KRH28045	Soybean	mitochondrion	43.73	45.26
Zm00001d047106_P001	Maize	plastid	45.08	44.93
KRH77393	Soybean	mitochondrion	42.71	44.37
Zm00001d029869_P001	Maize	mitochondrion	45.76	43.97
Bra027038.1-P	Field mustard	cytosol, plastid	39.32	43.94
CDY12954	Canola	nucleus	39.32	43.94
KXG38947	Sorghum	mitochondrion	47.46	43.75
KRH57359	Soybean	cytosol	42.37	43.71
KXG31078	Sorghum	plastid	46.78	43.67
KRH04088	Soybean	cytosol	43.05	43.64
CDY19564	Canola	nucleus	38.98	43.56
AT1G62520.1	Thale cress	nucleus	41.02	43.21
PGSC0003DMT400012224	Potato	nucleus	42.03	41.47
TraesCS4D01G361200.1	Wheat	plastid	43.05	41.23
TraesCS4B01G369900.1	Wheat	plastid	42.37	39.94
GSMUA_Achr6P19070_001	Banana	cytosol	13.9	31.06
GSMUA_Achr11P...	Banana	nucleus	27.12	30.77
GSMUA_Achr6P17990_001	Banana	nucleus	25.08	28.79
GSMUA_Achr7P19590_001	Banana	cytosol	8.14	27.91
KRH37293	Soybean	plastid	14.24	27.27
GSMUA_Achr11P...	Banana	cytosol	24.07	26.3
GSMUA_Achr9P00350_001	Banana	nucleus	25.08	25.96
GSMUA_AchrUn_...	Banana	cytosol	29.83	24.44
GSMUA_Achr6P24320_001	Banana	cytosol	26.78	23.44
GSMUA_Achr8P19240_001	Banana	nucleus	32.88	22.99
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	25.76	22.96
GSMUA_Achr9P24720_001	Banana	cytosol	27.12	22.16
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	28.81	22.08
GSMUA_Achr9P29950_001	Banana	cytosol	27.8	21.87
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	27.46	21.83
GSMUA_Achr1P08590_001	Banana	nucleus	30.17	21.34
GSMUA_Achr8P30300_001	Banana	nucleus	27.8	21.24
GSMUA_Achr11P...	Banana	nucleus	32.54	20.91
GSMUA_Achr6P19060_001	Banana	nucleus	12.54	16.37

Protein Annotations

EnsemblPlants:GSMUA_Achr1P01700_001	EnsemblPlants:GSMUA_Achr1T01700_001	EnsemblPlantsGene:GSMUA_Achr1G01700_001	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF12
SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002951426	UniProt:M0RW78	MapMan:15.5.15	:

Description

zinc finger protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr1G01700_001]

Coordinates

chr1:+:1391228..1392115

Molecular Weight (calculated)

30937.7 Da

IEP (calculated)

10.119

GRAVY (calculated)

-0.206

Length

295 amino acids

Sequence
(BLAST)

001: MATGWVKSLH CKSNAVEDVV YSPTRSSSSS SSAKKPLLSS VSCSSASHTV KDVILLAPNY PSCSSSIPKK PRHNTRPKSK HKPRTPRPCA SPPSVSASEL
101: VGPARAEPIP TLTELPAGHS SRRVVEIIFS SSWCSSGAGG VDGSAAAAAF PSEIEMLFRV HNLARTVARF EEHRASVRAQ ADDARCAADG NEMMRFHSGR
201: AGGVVYDAGV ARSAVWSAGR KVEGVRTFAG SGGAHASGGG GAGRRGMLVC RVIAGRVRGE SDPEREADSV SLGNGELLVF DPRAVLPCFL IIYKL

Best Arabidopsis Sequence Match ( AT1G62520.1 )
(BLAST)

001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL

Arabidopsis Description

Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.