CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRG97711
KRG99083
KRH14933
KRH16959
KRH24006
KRH27646
KRH27971
KRH28419
KRH29310
KRH31163
KRH53667
KRH57983
KRH64261
KRH67075
KRH73205
KRH77058
KRH77487
KRH77849

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	KRG99083	AT1G05410.1	21798944
AT4G12450.1	KRH27646	AT1G05410.1	21798944
AT4G12450.1	KRH77849	AT1G05410.1	21798944
AT4G12450.1	KRG95394	AT2G19650.1	21798944
AT4G12450.1	KRH67075	AT2G19650.1	21798944
AT4G12450.1	KRH28419	AT2G23290.1	21798944
AT4G12450.1	KRH57983	AT2G23290.1	21798944
AT4G12450.1	KRH77058	AT2G23290.1	21798944
AT4G12450.1	KRG97711	AT3G08530.1	21798944
AT4G12450.1	KRH14933	AT3G08530.1	21798944
AT4G12450.1	KRH31163	AT3G08530.1	21798944
AT4G12450.1	KRH73205	AT3G08530.1	21798944
AT4G12450.1	KRH24006	AT3G48150.1	21798944
AT4G12450.1	KRH27971	AT3G48150.1	21798944
AT4G12450.1	KRH29310	AT3G48150.1	21798944
AT4G12450.1	KRH77487	AT3G48150.1	21798944
AT4G12450.1	KRH16959	AT3G49580.1	21798944
AT4G12450.1	KRH53667	AT3G49580.1	21798944
AT4G12450.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57359	Soybean	cytosol	91.75	93.36
KRH37293	Soybean	plastid	37.8	71.43
KRH28045	Soybean	mitochondrion	69.76	71.23
KRH77393	Soybean	mitochondrion	68.73	70.42
Solyc08g079010.1.1	Tomato	cytosol	37.46	68.99
VIT_02s0154g00220.t01	Wine grape	cytosol	62.54	63.64
PGSC0003DMT400012224	Potato	nucleus	59.45	57.86
AT1G62520.1	Thale cress	nucleus	55.33	57.5
CDY12954	Canola	nucleus	51.89	57.2
CDY19564	Canola	nucleus	51.2	56.44
Bra027038.1-P	Field mustard	cytosol, plastid	51.2	56.44
CDY42181	Canola	cytosol	47.08	53.1
CDX76365	Canola	cytosol	47.08	53.1
Bra020842.1-P	Field mustard	cytosol	47.08	53.1
CDY63658	Canola	cytosol	49.48	51.8
Os10t0554001-01	Rice	cytosol	32.3	51.65
AT4G22560.1	Thale cress	cytosol, plastid	46.74	51.52
CDY16714	Canola	cytosol	49.14	51.44
Bra029455.1-P	Field mustard	cytosol	49.14	51.44
AT4G12450.1	Thale cress	cytosol	48.8	51.26
GSMUA_Achr2P10020_001	Banana	cytosol	42.96	46.64
GSMUA_Achr5P15290_001	Banana	nucleus	39.86	45.67
TraesCS5A01G536800.1	Wheat	cytosol	29.55	44.79
GSMUA_Achr4P27010_001	Banana	plastid	43.3	44.06
GSMUA_Achr7P07110_001	Banana	cytosol	41.58	43.84
GSMUA_Achr1P01700_001	Banana	nucleus	43.64	43.05
GSMUA_Achr4P30380_001	Banana	cytosol	41.58	42.76
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	40.21	39.66
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	38.14	38.41
TraesCS6A01G248100.1	Wheat	plastid	36.43	38.27
Zm00001d017504_P001	Maize	mitochondrion	38.49	38.23
HORVU6Hr1G063400.2	Barley	plastid	36.77	38.08
Zm00001d047106_P001	Maize	plastid	38.49	37.84
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	37.8	37.54
TraesCS6D01G230200.1	Wheat	plastid	36.08	37.5
TraesCS6B01G276600.1	Wheat	plastid	36.08	37.5
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	37.46	37.2
Zm00001d029869_P001	Maize	mitochondrion	38.83	36.81
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	36.77	36.39
KXG31078	Sorghum	plastid	38.83	35.76
Os02t0661600-00	Rice	mitochondrion	37.11	35.29
KXG38947	Sorghum	mitochondrion	38.14	34.69
TraesCS4B01G369900.1	Wheat	plastid	37.11	34.5
TraesCS4D01G361200.1	Wheat	plastid	36.08	34.09
KRH25897	Soybean	cytosol	19.24	31.46
KRH73867	Soybean	cytosol	12.37	23.84
KRG98330	Soybean	endoplasmic reticulum, golgi	31.27	23.82
KRH17425	Soybean	nucleus	33.68	23.67
KRH05942	Soybean	nucleus	33.68	23.5
KRH27121	Soybean	cytosol, plastid	33.68	22.48
KRH55605	Soybean	cytosol	34.02	22.45
KRH22216	Soybean	cytosol, plastid	33.68	22.32
KRH14275	Soybean	cytosol	19.59	21.35
KRH64726	Soybean	nucleus	30.93	21.13
KRH53192	Soybean	nucleus	30.24	20.8
KRH10693	Soybean	nucleus	25.43	18.59
KRH21644	Soybean	nucleus	25.09	18.3
KRH58632	Soybean	nucleus	21.65	17.4

Protein Annotations

EMBL:ACUP02010379	EnsemblPlants:KRH04088	EnsemblPlantsGene:GLYMA_17G139000	EntrezGene:100792099	Gene3D:3.90.228.10	PANTHER:PTHR31681
PANTHER:PTHR31681:SF12	ProteinID:KRH04088	ProteinID:KRH04088.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0001BA82AD
UniProt:I1MUY4	MapMan:15.5.15	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:11279687..11281242

Molecular Weight (calculated)

31773.1 Da

IEP (calculated)

10.047

GRAVY (calculated)

-0.417

Length

291 amino acids

Sequence
(BLAST)

001: MASAWVKSWQ CKSRAFEDVY HPHPKILSAG CRKSVESIKE LVDIPKPKPR PRKPKPKPKP PLEKHPSSKY PSSTTKPEFE ARTTMTRSRS STTTTTTSSR
101: GIIELPEGHP SRNVVEIIFH TSWGPKPFPG RVELIFKVQN APRTVARFEE FREAVKARAA AGLAEGNDGE ENARCIADGN EVMRFHCLGF AEDGVPYDGG
201: GCAWSFPEKK GAAICTFSGS GGAHETAGGG KGRRAMLVCR VVAGRVSKQL GFLDSLLDKR VGFDSVSGDN GALLVFDSRA VLPCFLIIYR L

Best Arabidopsis Sequence Match ( AT1G62520.1 )
(BLAST)

001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL

Arabidopsis Description

Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.