Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G369900.1 | Wheat | plastid | 93.18 | 91.69 |
| TraesCS5A01G536800.1 | Wheat | cytosol | 55.84 | 89.58 |
| TraesCS1D01G214000.1 | Wheat | mitochondrion, plastid | 50.32 | 53.63 |
| GSMUA_Achr5P15290_001 | Banana | nucleus | 39.29 | 47.64 |
| GSMUA_Achr2P10020_001 | Banana | cytosol | 39.29 | 45.15 |
| GSMUA_Achr4P30380_001 | Banana | cytosol | 40.26 | 43.82 |
| GSMUA_Achr1P01700_001 | Banana | nucleus | 41.23 | 43.05 |
| GSMUA_Achr4P27010_001 | Banana | plastid | 39.61 | 42.66 |
| TraesCS6D01G230200.1 | Wheat | plastid | 38.64 | 42.5 |
| GSMUA_Achr7P07110_001 | Banana | cytosol | 37.99 | 42.39 |
| GSMUA_Achr5P13520_001 | Banana | cytosol, mitochondrion, peroxisome | 40.58 | 42.37 |
| Solyc08g079010.1.1 | Tomato | cytosol | 21.43 | 41.77 |
| KRH57359 | Soybean | cytosol | 34.74 | 37.41 |
| KRH04088 | Soybean | cytosol | 34.09 | 36.08 |
| AT4G12450.1 | Thale cress | cytosol | 32.14 | 35.74 |
| Bra020842.1-P | Field mustard | cytosol | 29.87 | 35.66 |
| CDX76365 | Canola | cytosol | 29.87 | 35.66 |
| KRH28045 | Soybean | mitochondrion | 32.79 | 35.44 |
| AT1G62520.1 | Thale cress | nucleus | 32.14 | 35.36 |
| CDY42181 | Canola | cytosol | 29.55 | 35.27 |
| Bra029455.1-P | Field mustard | cytosol | 31.82 | 35.25 |
| CDY63658 | Canola | cytosol | 31.82 | 35.25 |
| CDY16714 | Canola | cytosol | 31.82 | 35.25 |
| KRH77393 | Soybean | mitochondrion | 32.47 | 35.21 |
| VIT_02s0154g00220.t01 | Wine grape | cytosol | 32.14 | 34.62 |
| CDY12954 | Canola | nucleus | 29.55 | 34.47 |
| Bra027038.1-P | Field mustard | cytosol, plastid | 29.55 | 34.47 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 29.55 | 34.47 |
| CDY19564 | Canola | nucleus | 29.22 | 34.09 |
| PGSC0003DMT400012224 | Potato | nucleus | 32.14 | 33.11 |
| KRH37293 | Soybean | plastid | 14.29 | 28.57 |
| TraesCS4D01G108700.1 | Wheat | nucleus | 25.0 | 17.62 |
| TraesCS2D01G004200.1 | Wheat | nucleus, plastid | 27.27 | 17.11 |
| TraesCS2D01G580400.1 | Wheat | nucleus | 26.62 | 16.37 |
| TraesCS4D01G215000.1 | Wheat | golgi | 22.4 | 15.97 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 24.35 | 15.59 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G361200.1 | EnsemblPlantsGene:TraesCS4D01G361200 | Gene3D:3.90.228.10 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF6 | SEG:seg |
| SUPFAM:SSF56399 | MapMan:15.5.15 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:507901821..507902747
Molecular Weight (calculated)
32466.5 Da
IEP (calculated)
10.558
GRAVY (calculated)
-0.411
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAATAWVRS LSCKYSTAVA DDAYSPLLPP PKKHPPTPTA KGAASVALLP PERGRESRRS RSMSSERDRP AAATARKTRK KEADATSEHA RKETPRVQRL
101: AASLERPGSA LLEMTELPEG HPSRRVVELI FASGWARADG AAEVETLFRV HGTARAAARF EAARAAARAR GEAAGDGRCA ADGNEVMRFQ CRPAAEAGGG
201: SEVICAAVAT CHKAGAARAV RTFAGSGAAD AGITGGREGR RGMLVCRVIA GRVRRASADE RPGEYDSVDA GDGELVVLDR RAVLPCFLVV YRVKPPPELS
301: TSSSGRSR
101: AASLERPGSA LLEMTELPEG HPSRRVVELI FASGWARADG AAEVETLFRV HGTARAAARF EAARAAARAR GEAAGDGRCA ADGNEVMRFQ CRPAAEAGGG
201: SEVICAAVAT CHKAGAARAV RTFAGSGAAD AGITGGREGR RGMLVCRVIA GRVRRASADE RPGEYDSVDA GDGELVVLDR RAVLPCFLVV YRVKPPPELS
301: TSSSGRSR
001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
Arabidopsis Description
Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.