Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g079010.1.1 | Tomato | cytosol | 51.51 | 97.47 |
| VIT_02s0154g00220.t01 | Wine grape | cytosol | 67.89 | 70.98 |
| KRH28045 | Soybean | mitochondrion | 60.2 | 63.16 |
| KRH77393 | Soybean | mitochondrion | 59.2 | 62.32 |
| KRH04088 | Soybean | cytosol | 57.86 | 59.45 |
| KRH57359 | Soybean | cytosol | 56.86 | 59.44 |
| AT1G62520.1 | Thale cress | nucleus | 53.51 | 57.14 |
| CDX76365 | Canola | cytosol | 48.49 | 56.2 |
| Bra020842.1-P | Field mustard | cytosol | 48.49 | 56.2 |
| CDY42181 | Canola | cytosol | 48.16 | 55.81 |
| CDY19564 | Canola | nucleus | 49.16 | 55.68 |
| CDY12954 | Canola | nucleus | 48.49 | 54.92 |
| CDY16714 | Canola | cytosol | 50.84 | 54.68 |
| Bra029455.1-P | Field mustard | cytosol | 50.84 | 54.68 |
| Bra027038.1-P | Field mustard | cytosol, plastid | 48.16 | 54.55 |
| CDY63658 | Canola | cytosol | 50.5 | 54.32 |
| AT4G12450.1 | Thale cress | cytosol | 50.17 | 54.15 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 47.49 | 53.79 |
| Os10t0554001-01 | Rice | cytosol | 30.77 | 50.55 |
| GSMUA_Achr2P10020_001 | Banana | cytosol | 41.14 | 45.9 |
| GSMUA_Achr5P15290_001 | Banana | nucleus | 38.46 | 45.28 |
| TraesCS5A01G536800.1 | Wheat | cytosol | 28.09 | 43.75 |
| GSMUA_Achr7P07110_001 | Banana | cytosol | 39.8 | 43.12 |
| GSMUA_Achr4P27010_001 | Banana | plastid | 41.14 | 43.01 |
| GSMUA_Achr4P30380_001 | Banana | cytosol | 40.13 | 42.4 |
| GSMUA_Achr1P01700_001 | Banana | nucleus | 41.47 | 42.03 |
| TraesCS6B01G276600.1 | Wheat | plastid | 37.79 | 40.36 |
| HORVU6Hr1G063400.2 | Barley | plastid | 37.79 | 40.21 |
| TraesCS6A01G248100.1 | Wheat | plastid | 37.12 | 40.07 |
| TraesCS6D01G230200.1 | Wheat | plastid | 36.79 | 39.29 |
| GSMUA_Achr5P13520_001 | Banana | cytosol, mitochondrion, peroxisome | 38.46 | 38.98 |
| Zm00001d017504_P001 | Maize | mitochondrion | 37.79 | 38.57 |
| KRH37293 | Soybean | plastid | 19.73 | 38.31 |
| HORVU1Hr1G053950.1 | Barley | mitochondrion, plastid | 37.46 | 38.1 |
| TraesCS1D01G214000.1 | Wheat | mitochondrion, plastid | 36.79 | 38.06 |
| Zm00001d029869_P001 | Maize | mitochondrion | 38.8 | 37.78 |
| Zm00001d047106_P001 | Maize | plastid | 37.12 | 37.5 |
| TraesCS1B01G224700.1 | Wheat | mitochondrion, plastid | 36.45 | 37.2 |
| TraesCS1A01G210700.1 | Wheat | mitochondrion, plastid | 35.79 | 36.52 |
| Os02t0661600-00 | Rice | mitochondrion | 37.12 | 36.27 |
| KXG31078 | Sorghum | plastid | 38.13 | 36.08 |
| KXG38947 | Sorghum | mitochondrion | 37.12 | 34.69 |
| TraesCS4B01G369900.1 | Wheat | plastid | 34.11 | 32.59 |
| TraesCS4D01G361200.1 | Wheat | plastid | 33.11 | 32.14 |
| PGSC0003DMT400025521 | Potato | plastid | 27.09 | 25.8 |
| PGSC0003DMT400074652 | Potato | plastid | 26.42 | 24.53 |
| PGSC0003DMT400076665 | Potato | cytosol | 13.04 | 24.53 |
| PGSC0003DMT400049491 | Potato | cytosol, nucleus, peroxisome | 32.44 | 22.56 |
| PGSC0003DMT400055929 | Potato | cytosol | 31.1 | 22.3 |
| PGSC0003DMT400078031 | Potato | extracellular, vacuole | 27.09 | 21.77 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400012224 | EnsemblPlantsGene:PGSC0003DMG400004794 | EntrezGene:102579011 | Gene3D:3.90.228.10 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF12 |
| PGSC:PGSC0003DMG400004794 | RefSeq:XP_006355482.1 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI0002962549 | UniProt:M1A0X5 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400004794]
Coordinates
chr8:+:52630219..52631450
Molecular Weight (calculated)
32407.4 Da
IEP (calculated)
10.050
GRAVY (calculated)
-0.536
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGWVKSWQ CKSRALDDVV NNHHHQYHIL PNSASCKNGV KSLKDVVENT KNGKPRKKKP SRQPEQQLTK RPGPGPRGGS EPGLNREKSR ASTSTRLSRA
101: ATTDSFFPAL TELPEGHPSR NVVGIIFQTS WSPKVFSGRV EMVFKVQNLP RTVTRFEEYR EVVKSRAGNG GESAAEKGGE DHARCVADGN EVMRFYCLGP
201: TNGGAYETGN SAWTFSAGKG AAVCTYSGSG AAHENAGGGR GRRAMLVCRV IAGRVCKQLG FDSLIEGRVG YDSVSGDNGE LLVFDSRAVL PCFLIIYKL
101: ATTDSFFPAL TELPEGHPSR NVVGIIFQTS WSPKVFSGRV EMVFKVQNLP RTVTRFEEYR EVVKSRAGNG GESAAEKGGE DHARCVADGN EVMRFYCLGP
201: TNGGAYETGN SAWTFSAGKG AAVCTYSGSG AAHENAGGGR GRRAMLVCRV IAGRVCKQLG FDSLIEGRVG YDSVSGDNGE LLVFDSRAVL PCFLIIYKL
001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
Arabidopsis Description
Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.