Factsheet for PGSC0003DMT400074652

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013220.1.1	Tomato	nucleus	94.1	75.19
GSMUA_Achr11P...	Banana	cytosol	52.17	62.22
GSMUA_Achr9P00350_001	Banana	nucleus	54.04	61.05
GSMUA_Achr6P17990_001	Banana	nucleus	47.52	59.53
PGSC0003DMT400025521	Potato	plastid	52.17	53.5
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	54.97	53.47
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	53.42	51.04
KRH64726	Soybean	nucleus	66.15	50.0
KRH53192	Soybean	nucleus	64.6	49.17
GSMUA_Achr8P30300_001	Banana	nucleus	57.76	48.19
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	54.66	45.71
VIT_18s0001g03670.t01	Wine grape	nucleus	67.7	44.58
PGSC0003DMT400076665	Potato	cytosol	18.94	38.36
Os11t0169400-01	Rice	nucleus	49.69	37.65
KXG27839	Sorghum	nucleus, plastid	51.24	36.67
Zm00001d053006_P001	Maize	nucleus	48.14	36.56
TraesCS4D01G108700.1	Wheat	nucleus	49.38	36.38
TraesCS4A01G207500.1	Wheat	nucleus	48.76	36.18
HORVU4Hr1G019890.1	Barley	nucleus	48.14	36.05
TraesCS4B01G111000.1	Wheat	nucleus	48.76	35.93
PGSC0003DMT400078031	Potato	extracellular, vacuole	38.51	33.33
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	41.3	30.93
Zm00001d004822_P001	Maize	nucleus, plastid	33.23	30.66
PGSC0003DMT400055929	Potato	cytosol	38.2	29.5
PGSC0003DMT400012224	Potato	nucleus	24.53	26.42

Protein Annotations

EnsemblPlants:PGSC0003DMT400074652	EnsemblPlantsGene:PGSC0003DMG400029024	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21	PGSC:PGSC0003DMG400029024	ScanProsite:PS00028
SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002955441	UniProt:M1CU00	MapMan:15.5.15	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029024]

Coordinates

chr11:-:10254801..10257596

Molecular Weight (calculated)

35366.3 Da

IEP (calculated)

8.715

GRAVY (calculated)

-0.346

Length

322 amino acids

Sequence
(BLAST)

001: MHRPEPSPSP PKGRKLNGTS SFSSSSASAS VSSSSLLSSS PATSSSIRGM PFRKLSGCYE CRMVVDPIAR DPSLRSNICG ECGHIFMKVE NLELHQAVRH
101: AVSELGPEDT SRNIVEIIFQ SSWLNKKTPV CKIDRILKIH NTPTTISRFE EYREAIKVKA TNLVKKHPRC IADGNELLRF HCTTFMCSLG LNGSSNLCTV
201: PNCNVCALIK NGFKLATTTH HGTKKGILTT ATSGKAHDNA RVVVEEEEEE EKRAMLVCRV IAGRVKKTLD GNNNNNNNNN SNNLEEYDSI GGAAGLYSNL
301: DELYVFNPKA ILPCFVVIYK SF

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.