Factsheet for PGSC0003DMT400078031

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076820.1.1	Tomato	extracellular, vacuole	94.09	92.11
VIT_06s0004g06240.t01	Wine grape	plastid	55.38	61.86
KRG98330	Soybean	endoplasmic reticulum, golgi	56.45	54.97
AT2G29660.1	Thale cress	golgi, plasma membrane	52.96	52.81
CDX97869	Canola	golgi	51.88	52.45
CDY02000	Canola	golgi	52.69	52.13
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	52.69	51.99
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	51.34	51.34
CDY51355	Canola	golgi	51.08	51.21
CDY45464	Canola	golgi	52.42	42.03
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	40.59	40.7
PGSC0003DMT400074652	Potato	plastid	33.33	38.51
PGSC0003DMT400025521	Potato	plastid	31.45	37.26
TraesCS4D01G215000.1	Wheat	golgi	42.47	36.57
TraesCS4A01G089900.1	Wheat	endoplasmic reticulum, golgi	42.47	36.57
PGSC0003DMT400076665	Potato	cytosol	15.59	36.48
TraesCS4B01G214400.1	Wheat	golgi	42.2	36.26
HORVU4Hr1G061070.1	Barley	golgi	41.94	35.45
EER92505	Sorghum	extracellular, plasma membrane	41.67	34.07
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	40.32	32.47
Os03t0264600-00	Rice	endoplasmic reticulum, nucleus	40.32	32.19
PGSC0003DMT400055929	Potato	cytosol	31.72	28.3
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	32.26	27.91
PGSC0003DMT400012224	Potato	nucleus	21.77	27.09

Protein Annotations

EnsemblPlants:PGSC0003DMT400078031	EnsemblPlantsGene:PGSC0003DMG401030350	EntrezGene:102585494	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF4	PFscan:PS50157
PGSC:PGSC0003DMG401030350	RefSeq:XP_006350826.1	ScanProsite:PS00028	SEG:seg	SignalP:SignalP-noTM	SMART:SM00355
SUPFAM:SSF56399	TMHMM:TMhelix	UniParc:UPI0002949969	UniProt:M1CZA0	MapMan:15.5.15	:

Description

Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG401030350]

Coordinates

chr6:+:57087896..57089374

Molecular Weight (calculated)

41947.0 Da

IEP (calculated)

8.377

GRAVY (calculated)

-0.331

Length

372 amino acids

Sequence
(BLAST)

001: MATVFRPLFS NFLSLLFLLL HLGCFISSQN HSSKKRKLSS NRDSSPPPPS TRLKSSTTNV ISSSWSYIKR IFSSNKQKII NTRTHHNPSI QSPCSSTRSL
101: QKPISSDDPI NRSVSPIPES EITSDQLFFS LRNDIYPCTL CGEVFQSPIH LDQHQSIKHA ISELTDGDSG NNIVRIIFQT GWVDKAKNPV INRILKIHNS
201: KRILSRFEEY RECVKLKASR NAVVKRDERC IADGNELLRF HCTTFICELG QNGNSSICTQ QYCSVCGIIK SGFSHKMDGI SMQPTSWRGH VSVPEEIEEE
301: FGFMNVKRAM LVCRVIAGRV GSDPDYVDKE DSGFDSLVGR ENGSQMRLDE EDELLVFNSR AVLPCFVIVY TV

Best Arabidopsis Sequence Match ( AT2G29660.1 )
(BLAST)

001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV

Arabidopsis Description

At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.