Factsheet for Bra039993.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	mitochondrion, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51355	Canola	golgi	96.51	96.77
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	86.56	85.41
AT2G29660.1	Thale cress	golgi, plasma membrane	82.26	82.04
VIT_06s0004g06240.t01	Wine grape	plastid	52.96	59.16
PGSC0003DMT400078031	Potato	extracellular, vacuole	51.34	51.34
KRG98330	Soybean	endoplasmic reticulum, golgi	52.42	51.05
Solyc06g076820.1.1	Tomato	extracellular, vacuole	51.34	50.26
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	38.44	38.54
TraesCS4A01G089900.1	Wheat	endoplasmic reticulum, golgi	41.94	36.11
TraesCS4D01G215000.1	Wheat	golgi	41.67	35.88
EER92505	Sorghum	extracellular, plasma membrane	43.82	35.82
TraesCS4B01G214400.1	Wheat	golgi	41.4	35.57
HORVU4Hr1G061070.1	Barley	golgi	41.67	35.23
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	42.47	34.2
Os03t0264600-00	Rice	endoplasmic reticulum, nucleus	42.2	33.69
Bra027038.1-P	Field mustard	cytosol, plastid	22.31	31.44
Bra020842.1-P	Field mustard	cytosol	21.51	31.01
Bra014094.1-P	Field mustard	plastid	31.99	28.47
Bra015598.1-P	Field mustard	plastid	31.72	28.16
Bra029455.1-P	Field mustard	cytosol	20.97	28.06
Bra008218.1-P	Field mustard	nucleus	31.72	26.46
Bra026366.1-P	Field mustard	nucleus	29.84	26.06
Bra015824.1-P	Field mustard	nucleus	32.26	25.92
Bra019849.1-P	Field mustard	cytosol, mitochondrion	23.66	24.58
Bra022735.1-P	Field mustard	nucleus	30.65	24.1

Protein Annotations

EnsemblPlants:Bra039993.1	EnsemblPlants:Bra039993.1-P	EnsemblPlantsGene:Bra039993	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF24	PFscan:PS50157
PFscan:PS51257	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	TMHMM:TMhelix	UniParc:UPI0002544414
UniProt:M4FFW9	MapMan:15.5.15	:	:	:	:

Description

AT2G29660 (E=2e-131) | zinc finger (C2H2 type) family protein

Coordinates

chrA04:+:13268142..13269260

Molecular Weight (calculated)

40749.6 Da

IEP (calculated)

8.258

GRAVY (calculated)

-0.227

Length

372 amino acids

Sequence
(BLAST)

001: MAARKLGSLL RQHFFSLFFL FVGCFFFPKG GDCKHKKRKK KKLRTVSSGS GSGLSSSWLS LKRFFLSTTR ISKPRSQTHP NGQLTTLTSA RSSHNSLVTL
101: VQPDPETRVE NGLSDDSEEI FSCTTCGEIF PKTNLLEHHF AVKHAVTELT DGESSTNIVK IIFKSGWPDL NNKAPEIHRI LKIHNSPKIL ARFEEYREFV
201: KAKAARTSSG GGGGGGRRWD DERCVADGNE LLRFYCSTFM CDLGQNGNSN LCGHQYCSVC GIIGAGFSPK LDGIATLATG WRGHAAVSEE VEEEFGFMNV
301: KRAMLVCRVV AGRVGCDLIA DDDVDKSDGG YDSLVGEGSG SKSGALLRID DEELLVFNPR AVLPCFVIVY TV

Best Arabidopsis Sequence Match ( AT2G29660.1 )
(BLAST)

001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV

Arabidopsis Description

At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.