Factsheet for Bra014094.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16999	Canola	nucleus, plastid	92.82	93.72
CDY17799	Canola	nucleus, plastid	94.02	90.55
Bra015598.1-P	Field mustard	plastid	87.56	87.35
PGSC0003DMT400025521	Potato	plastid	47.61	63.38
GSMUA_Achr11P...	Banana	nucleus	38.52	61.92
Bra008218.1-P	Field mustard	nucleus	62.92	58.97
Bra015824.1-P	Field mustard	nucleus	64.83	58.53
Solyc04g081370.2.1	Tomato	extracellular, vacuole	60.05	55.65
TraesCS2A01G004600.1	Wheat	nucleus	38.52	47.63
GSMUA_Achr8P19240_001	Banana	nucleus	45.69	45.26
GSMUA_Achr11P...	Banana	nucleus	47.13	42.92
Os04t0115500-00	Rice	nucleus	46.89	40.83
Zm00001d004497_P001	Maize	nucleus, plastid	43.78	39.87
TraesCSU01G012300.1	Wheat	nucleus, plastid	44.02	37.94
Zm00001d024883_P001	Maize	nucleus	45.93	37.5
TraesCS2D01G004200.1	Wheat	nucleus, plastid	43.78	37.27
EES10376	Sorghum	nucleus	46.89	36.16
Bra020842.1-P	Field mustard	cytosol	21.53	34.88
Bra026366.1-P	Field mustard	nucleus	34.69	34.04
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	29.67	32.89
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	28.47	31.99
Bra027038.1-P	Field mustard	cytosol, plastid	20.1	31.82
Bra019849.1-P	Field mustard	cytosol, mitochondrion	27.03	31.56
Bra029455.1-P	Field mustard	cytosol	20.57	30.94
Bra022735.1-P	Field mustard	nucleus	34.93	30.87

Protein Annotations

EnsemblPlants:Bra014094.1	EnsemblPlants:Bra014094.1-P	EnsemblPlantsGene:Bra014094	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF22	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002546915	UniProt:M4DC81	MapMan:15.5.15

Description

AT1G75710 (E=3e-128) | zinc finger (C2H2 type) family protein

Coordinates

chrA08:+:3571089..3573298

Molecular Weight (calculated)

45944.7 Da

IEP (calculated)

9.924

GRAVY (calculated)

-0.502

Length

418 amino acids

Sequence
(BLAST)

001: MAPLPLIPNQ TQSQTRLFSS DPKKKKSRKK QTPLPQTQTQ TQTLKKKTVQ SSSSSWSQIK NLLSCKQIEG PRVHEPSKIT SSSCGSSLCK FSDVIYGNAR
101: VIHRSDHSPG SSNLGQDAGL LTRKPVTRGS SATVRSNGCG AYTSYSSSKA MQFRKLSGCY ECHMIVDPCR YPVSPRICAC PQCGEIFPKL ETLEHHQAVR
201: HAVSELGPED SGRNIVDIIF KSSWLRKDSP IYNIERILKV HNTQRTIQRF EDCRDAVKSH AHASTRKEPR SAADGNELLR FHCTTVSCSL GSRGSTSLCS
301: NFPGCRVCTI IRHGFHAKTL RLGGGANEIK GVRTTASSGR AHDASRCFDQ RRAMLVCRVI AGRVRRVQSD AQEDENGSGS YDSVAGPAGV YTNLDDLVVF
401: NPKAILPCFV VIYKVSEP

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.