CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014094.1-P	Field mustard	plastid	90.55	94.02
CDY16999	Canola	nucleus, plastid	88.02	92.27
CDY20903	Canola	nucleus, plastid	82.03	84.96
CDY06723	Canola	nucleus, plastid	80.88	83.77
PGSC0003DMT400025521	Potato	plastid	42.86	59.24
CDX73189	Canola	nucleus	57.14	57.81
CDY47503	Canola	nucleus	57.83	57.57
CDY13543	Canola	nucleus	56.45	56.71
GSMUA_Achr11P...	Banana	nucleus	33.87	56.54
CDY39052	Canola	nucleus	57.6	56.05
Solyc04g081370.2.1	Tomato	extracellular, vacuole	55.07	52.99
TraesCS2A01G004600.1	Wheat	nucleus	34.1	43.79
GSMUA_Achr8P19240_001	Banana	nucleus	41.71	42.89
GSMUA_Achr11P...	Banana	nucleus	42.86	40.52
Os04t0115500-00	Rice	nucleus	41.94	37.92
Zm00001d004497_P001	Maize	nucleus, plastid	39.17	37.04
TraesCSU01G012300.1	Wheat	nucleus, plastid	39.4	35.26
Zm00001d024883_P001	Maize	nucleus	41.24	34.96
TraesCS2D01G004200.1	Wheat	nucleus, plastid	39.17	34.62
CDY42181	Canola	cytosol	20.51	34.5
CDX76365	Canola	cytosol	20.28	34.11
EES10376	Sorghum	nucleus	42.17	33.76
CDY29286	Canola	nucleus	31.11	32.85
CDX89265	Canola	nucleus	31.34	31.85
CDY12954	Canola	nucleus	19.12	31.44
CDY19564	Canola	nucleus	18.89	31.06
CDY16714	Canola	cytosol	19.82	30.94
CDY63658	Canola	cytosol	19.82	30.94
CDY06635	Canola	nucleus	31.34	30.91
CDY28761	Canola	nucleus	31.34	30.43
CDX97869	Canola	golgi	25.58	30.16
CDX97964	Canola	cytosol	24.88	30.08
CDY02000	Canola	golgi	26.04	30.05
CDY49785	Canola	cytosol	24.19	29.33
CDY51355	Canola	golgi	24.65	28.84
CDY18344	Canola	nucleus	29.72	28.48
CDY45464	Canola	golgi	26.04	24.35

Protein Annotations

EnsemblPlants:CDY17799	EnsemblPlantsGene:GSBRNA2T00002072001	Gene3D:3.90.228.10	GO:A0A078FXA8	PANTHER:PTHR31681	PANTHER:PTHR31681:SF22
ProteinID:CDY17799	ProteinID:CDY17799.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0004EED48A	UniProt:A0A078FXA8
MapMan:15.5.15	:	:	:	:	:

Description

BnaC08g04130DBnaC08g04130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXA8]

Coordinates

chrLK032078:+:50453..60073

Molecular Weight (calculated)

47801.1 Da

IEP (calculated)

10.074

GRAVY (calculated)

-0.482

Length

434 amino acids

Sequence
(BLAST)

001: MAPLPLIPNQ TQSQTRLSSS DPKKKKSRKK QTPLPQTQTQ TQTLKKKTVQ SSSSSWSQIK NLLSCKQIEG PRVHEPSKIT SSSCGSSLCK FSDVSYGNAR
101: VIHRSDHSPE SSNLGQDAGL LTRKPVTRGS SSTVISNGCG AYTSYSSSKA MQFRKLSGCY ECHMIVDPSR YPVSPRICAC PQFSLFISFE KVKICVEKNT
201: CFRVCPKKKT FGNQADIKIL ELGPEDSGRN IVDIIFKSSW LRKDSPIYNI ERILKVHNTQ RTIQRFEDCR DAVKSHAHAS TRKEPRSAAD GNELLRFQCT
301: TVSCSLGSRG STSLCSNFPG CRVCTIIRHG FHAKTLRLGG GANEIKGVRT TASSGRAHDA SRCFDQRRAM LVCRVIAGRV RRVQSDAQED ENGSGSYDSV
401: AGPAGVYTNL DDLVVFNPKA ILPCFVVIYK VSEP

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.