CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79176
CDX89554
CDX91876
CDX93183
CDY07174
CDY08148
CDY10107
CDY36901
CDY38933
CDY44976
CDY47288
CDY48504
CDY52927
CDY58069
CDY58070
CDY67475
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	CDY10107	AT1G05410.1	21798944
AT4G12450.1	CDY47288	AT1G05410.1	21798944
AT4G12450.1	CDX93183	AT2G19650.1	21798944
AT4G12450.1	CDY52927	AT2G19650.1	21798944
AT4G12450.1	CDX89554	AT2G23290.1	21798944
AT4G12450.1	CDY38933	AT2G23290.1	21798944
AT4G12450.1	CDY36901	AT3G48150.1	21798944
AT4G12450.1	CDY44976	AT3G48150.1	21798944
AT4G12450.1	CDY58069	AT3G48150.1	21798944
AT4G12450.1	CDY58070	AT3G48150.1	21798944
AT4G12450.1	CDY70805	AT3G48150.1	21798944
AT4G12450.1	CDY08148	AT3G49580.1	21798944
AT4G12450.1	CDX79176	AT4G01090.1	21798944
AT4G12450.1	CDX91876	AT4G01090.1	21798944
AT4G12450.1	CDY07174	AT4G01090.1	21798944
AT4G12450.1	CDY48504	AT4G01090.1	21798944
AT4G12450.1	CDY67475	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029455.1-P	Field mustard	cytosol	100.0	100.0
CDY63658	Canola	cytosol	98.56	98.56
AT4G12450.1	Thale cress	cytosol	85.61	85.92
CDY42181	Canola	cytosol	69.42	74.81
CDX76365	Canola	cytosol	69.06	74.42
Solyc08g079010.1.1	Tomato	cytosol	33.45	58.86
VIT_02s0154g00220.t01	Wine grape	cytosol	55.4	53.85
CDY19564	Canola	nucleus	50.72	53.41
CDY12954	Canola	nucleus	50.72	53.41
KRH28045	Soybean	mitochondrion	54.32	52.98
KRH77393	Soybean	mitochondrion	52.88	51.76
PGSC0003DMT400012224	Potato	nucleus	54.68	50.84
KRH04088	Soybean	cytosol	51.44	49.14
KRH57359	Soybean	cytosol	50.36	48.95
Os10t0554001-01	Rice	cytosol	31.3	47.8
GSMUA_Achr5P15290_001	Banana	nucleus	42.09	46.06
GSMUA_Achr2P10020_001	Banana	cytosol	43.88	45.52
GSMUA_Achr4P27010_001	Banana	plastid	45.32	44.06
TraesCS5A01G536800.1	Wheat	cytosol	30.22	43.75
GSMUA_Achr1P01700_001	Banana	nucleus	46.4	43.73
GSMUA_Achr7P07110_001	Banana	cytosol	42.81	43.12
GSMUA_Achr4P30380_001	Banana	cytosol	42.45	41.7
TraesCS6A01G248100.1	Wheat	plastid	41.01	41.16
TraesCS6D01G230200.1	Wheat	plastid	41.01	40.71
TraesCS6B01G276600.1	Wheat	plastid	41.01	40.71
Zm00001d017504_P001	Maize	mitochondrion	42.09	39.93
HORVU6Hr1G063400.2	Barley	plastid	40.29	39.86
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	41.01	38.64
KXG31078	Sorghum	plastid	41.73	36.71
KRH37293	Soybean	plastid	20.14	36.36
Os02t0661600-00	Rice	mitochondrion	39.57	35.95
Zm00001d047106_P001	Maize	plastid	38.13	35.81
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	35.97	34.6
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	35.97	34.13
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	35.97	34.13
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	35.97	34.01
Zm00001d029869_P001	Maize	mitochondrion	37.05	33.55
KXG38947	Sorghum	mitochondrion	37.05	32.19
TraesCS4D01G361200.1	Wheat	plastid	35.25	31.82
TraesCS4B01G369900.1	Wheat	plastid	35.25	31.31
CDY29286	Canola	nucleus	34.53	23.36
CDX97964	Canola	cytosol	29.5	22.84
CDX89265	Canola	nucleus	34.53	22.48
CDY49785	Canola	cytosol	28.78	22.35
CDY06635	Canola	nucleus	34.89	22.05
CDY28761	Canola	nucleus	34.53	21.48
CDX97869	Canola	golgi	28.42	21.47
CDX73189	Canola	nucleus	33.09	21.45
CDY47503	Canola	nucleus	33.09	21.1
CDY51355	Canola	golgi	28.06	21.02
CDY18344	Canola	nucleus	34.17	20.97
CDY16999	Canola	nucleus, plastid	30.94	20.77
CDY06723	Canola	nucleus, plastid	31.3	20.76
CDY20903	Canola	nucleus, plastid	31.3	20.76
CDY02000	Canola	golgi	28.06	20.74
CDY13543	Canola	nucleus	32.01	20.6
CDY17799	Canola	nucleus, plastid	30.94	19.82
CDY39052	Canola	nucleus	31.65	19.73
CDY45464	Canola	golgi	28.06	16.81

Protein Annotations

EnsemblPlants:CDY16714	EnsemblPlantsGene:GSBRNA2T00094579001	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF12	ProteinID:CDY16714
ProteinID:CDY16714.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI000254278A	UniProt:A0A078FUL4	MapMan:15.5.15

Description

BnaA09g20920DBnaA09g20920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUL4]

Coordinates

chrLK032066:+:769408..770304

Molecular Weight (calculated)

30291.6 Da

IEP (calculated)

8.574

GRAVY (calculated)

-0.474

Length

278 amino acids

Sequence
(BLAST)

001: MPIGWVKSLH CKSRAFDDVY HHSNNGKLSL PSYSCRKSVK DVIDTRPTQQ GSGDKNLKPD ANLRRLRSSR RPESECNSSY NPTRRSVSAR ASTESAALPV
101: LTDLPDGHPS RNVVEIIFQS SWSSEEFPGR VEMIFKVENG SRAVTRFEEY REAVKLRSRS NFDSDDGACD EDARCSADGN EMMRFYPLGP IPGGINGGAW
201: VFPGGKGAAV CTFSGSGEAH DSTGGGGGRR AMLICRVIAG RVAKKGEFGS DSVAGRDGEL IVFDARAVLP CFLIFFRL

Best Arabidopsis Sequence Match ( AT4G12450.1 )
(BLAST)

001: MPIGWVKSLH CKSKAFDDVY HHHSNKGKLL LPSYSCRKNV RDVVNTQPGT VKKNPKPDPS LRRLCSSRRP ELDSNSHHPT RRSVSARASS ESVLPVLTDL
101: PDGHPSRNVV EIIFQSSWSS DEFPGRVEMI FKVENGSKAV TRFEEYREAV KSRSCSKVDS DRVDGSACDE NARCSADGNE MMRFFPLGPI PGGINGGAWG
201: FPGGKGAAVC TFSGSGEAHA STGGGGGRRA MLICRVIAGR VAKKGEFGSD SVAGRAGELI VFDARAVLPC FLIFFRL

Arabidopsis Description

At4g12450 [Source:UniProtKB/TrEMBL;Acc:Q9SU37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.