Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 6
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018369.1-P | Field mustard | extracellular, golgi, plastid | 98.94 | 98.67 |
| CDX97869 | Canola | golgi | 83.51 | 85.33 |
| CDY51355 | Canola | golgi | 83.78 | 84.91 |
| AT2G29660.1 | Thale cress | golgi, plasma membrane | 83.51 | 84.18 |
| CDY45464 | Canola | golgi | 99.2 | 80.39 |
| VIT_06s0004g06240.t01 | Wine grape | plastid | 53.72 | 60.66 |
| KRG98330 | Soybean | endoplasmic reticulum, golgi | 54.52 | 53.66 |
| PGSC0003DMT400078031 | Potato | extracellular, vacuole | 52.13 | 52.69 |
| Solyc06g076820.1.1 | Tomato | extracellular, vacuole | 52.39 | 51.84 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 39.1 | 39.62 |
| TraesCS4A01G089900.1 | Wheat | endoplasmic reticulum, golgi | 42.29 | 36.81 |
| TraesCS4D01G215000.1 | Wheat | golgi | 42.02 | 36.57 |
| TraesCS4B01G214400.1 | Wheat | golgi | 41.76 | 36.26 |
| HORVU4Hr1G061070.1 | Barley | golgi | 42.02 | 35.91 |
| EER92505 | Sorghum | extracellular, plasma membrane | 43.09 | 35.6 |
| Os03t0264600-00 | Rice | endoplasmic reticulum, nucleus | 42.29 | 34.12 |
| Zm00001d028537_P001 | Maize | endoplasmic reticulum, plasma membrane | 41.49 | 33.77 |
| CDY12954 | Canola | nucleus | 22.61 | 32.2 |
| CDY19564 | Canola | nucleus | 22.34 | 31.82 |
| CDY42181 | Canola | cytosol | 20.48 | 29.84 |
| CDX76365 | Canola | cytosol | 20.48 | 29.84 |
| CDY06723 | Canola | nucleus, plastid | 31.91 | 28.64 |
| CDY20903 | Canola | nucleus, plastid | 31.65 | 28.4 |
| CDY63658 | Canola | cytosol | 20.74 | 28.06 |
| CDY16714 | Canola | cytosol | 20.74 | 28.06 |
| CDX73189 | Canola | nucleus | 31.65 | 27.74 |
| CDY13543 | Canola | nucleus | 31.65 | 27.55 |
| CDY47503 | Canola | nucleus | 31.91 | 27.52 |
| CDY39052 | Canola | nucleus | 31.91 | 26.91 |
| CDY16999 | Canola | nucleus, plastid | 29.52 | 26.81 |
| CDY17799 | Canola | nucleus, plastid | 30.05 | 26.04 |
| CDY29286 | Canola | nucleus | 28.46 | 26.03 |
| CDX89265 | Canola | nucleus | 28.46 | 25.06 |
| CDY06635 | Canola | nucleus | 28.99 | 24.77 |
| CDY28761 | Canola | nucleus | 28.99 | 24.38 |
| CDY49785 | Canola | cytosol | 22.87 | 24.02 |
| CDX97964 | Canola | cytosol | 22.61 | 23.68 |
| CDY18344 | Canola | nucleus | 28.46 | 23.62 |
Protein Annotations
| EnsemblPlants:CDY02000 | EnsemblPlantsGene:GSBRNA2T00113321001 | Gene3D:3.90.228.10 | GO:A0A078EIU5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF24 | PFscan:PS50157 |
| PFscan:PS51257 | ProteinID:CDY02000 | ProteinID:CDY02000.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF56399 |
| TMHMM:TMhelix | UniParc:UPI0004EB8D4E | MapMan:15.5.15 | : | : | : |
Description
BnaC04g15010D
Coordinates
chrLK031931:+:219993..221316
Molecular Weight (calculated)
41512.8 Da
IEP (calculated)
8.600
GRAVY (calculated)
-0.175
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARKLGSLL RQHFFSLFFL FVGCFFFSKG CDLRQKRRKK KLRTVTSGSG LSSSWTYLKR VFLSTTRISK SRNQTHPNGP LTTLTSARSS QNSLVTLVQP
101: DPETRTENGF SDISSSDSPP FLPLRNEIFP CTTCGEIFPK TTLLEHHIAI KHAVSELVDG ESSTNIVKII FKSGWPEQGD NKKIPEIHRI LKIHNSPKIL
201: ARFEEYREFV KAKAARGSGN GRWDDERCVV DGNELLRFYC STFMCSLGQN GSSGLCGHQY CSICGIIGSG FSPKLDGIAT FATGWRGHVA VPEEVEEEFG
301: FMNVKRAMLV CRVVAGRVGC DLIADDDVDK SGGGYDSLVG QGSGSKSGAL LRIDDEELLV FNPRAVLPCF VIVYTV
101: DPETRTENGF SDISSSDSPP FLPLRNEIFP CTTCGEIFPK TTLLEHHIAI KHAVSELVDG ESSTNIVKII FKSGWPEQGD NKKIPEIHRI LKIHNSPKIL
201: ARFEEYREFV KAKAARGSGN GRWDDERCVV DGNELLRFYC STFMCSLGQN GSSGLCGHQY CSICGIIGSG FSPKLDGIAT FATGWRGHVA VPEEVEEEFG
301: FMNVKRAMLV CRVVAGRVGC DLIADDDVDK SGGGYDSLVG QGSGSKSGAL LRIDDEELLV FNPRAVLPCF VIVYTV
001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV
Arabidopsis Description
At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.