Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28761 | Canola | nucleus | 83.22 | 84.34 |
| CDY06635 | Canola | nucleus | 81.02 | 83.41 |
| AT5G54630.1 | Thale cress | nucleus | 83.66 | 80.3 |
| KRH25897 | Soybean | cytosol | 29.58 | 75.28 |
| CDY29286 | Canola | nucleus | 66.23 | 72.99 |
| CDX89265 | Canola | nucleus | 67.77 | 71.9 |
| KRH55605 | Soybean | cytosol | 65.56 | 67.35 |
| KRH22216 | Soybean | cytosol, plastid | 63.58 | 65.6 |
| KRH27121 | Soybean | cytosol, plastid | 62.47 | 64.91 |
| VIT_19s0014g05000.t01 | Wine grape | cytosol, plastid | 61.15 | 64.57 |
| PGSC0003DMT400049491 | Potato | cytosol, nucleus, peroxisome | 58.5 | 61.63 |
| Solyc07g063970.2.1 | Tomato | cytosol, nucleus, peroxisome | 57.62 | 61.12 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 57.4 | 54.05 |
| HORVU3Hr1G077490.2 | Barley | nucleus | 56.73 | 52.99 |
| TraesCS3B01G353600.1 | Wheat | nucleus | 56.73 | 52.88 |
| Os01t0785900-01 | Rice | mitochondrion, nucleus, peroxisome, plastid | 56.51 | 52.78 |
| Zm00001d043243_P001 | Maize | nucleus | 56.73 | 50.89 |
| Zm00001d012605_P001 | Maize | nucleus | 56.07 | 50.7 |
| TraesCS3A01G324600.1 | Wheat | nucleus | 56.73 | 50.69 |
| EES03733 | Sorghum | nucleus | 56.95 | 49.33 |
| Os06t0683000-01 | Rice | cytosol, nucleus, plastid | 47.68 | 46.45 |
| Zm00001d014485_P001 | Maize | nucleus, plastid | 39.51 | 40.87 |
| EER88828 | Sorghum | cytosol | 38.19 | 40.05 |
| CDX97964 | Canola | cytosol | 30.91 | 39.0 |
| CDY49785 | Canola | cytosol | 30.02 | 37.99 |
| CDY42181 | Canola | cytosol | 20.09 | 35.27 |
| CDX76365 | Canola | cytosol | 20.09 | 35.27 |
| CDY47503 | Canola | nucleus | 33.55 | 34.86 |
| CDY19564 | Canola | nucleus | 20.31 | 34.85 |
| CDY63658 | Canola | cytosol | 21.19 | 34.53 |
| CDX73189 | Canola | nucleus | 32.67 | 34.5 |
| CDY12954 | Canola | nucleus | 20.09 | 34.47 |
| CDY20903 | Canola | nucleus, plastid | 31.79 | 34.37 |
| CDY06723 | Canola | nucleus, plastid | 31.79 | 34.37 |
| CDY16714 | Canola | cytosol | 20.97 | 34.17 |
| CDY13543 | Canola | nucleus | 32.23 | 33.8 |
| CDY39052 | Canola | nucleus | 32.89 | 33.41 |
| CDY16999 | Canola | nucleus, plastid | 28.7 | 31.4 |
| CDX97869 | Canola | golgi | 25.17 | 30.98 |
| CDY51355 | Canola | golgi | 24.5 | 29.92 |
| CDY17799 | Canola | nucleus, plastid | 28.48 | 29.72 |
| CDY02000 | Canola | golgi | 23.62 | 28.46 |
| CDY45464 | Canola | golgi | 23.62 | 23.06 |
Protein Annotations
| EnsemblPlants:CDY18344 | EnsemblPlantsGene:GSBRNA2T00002937001 | Gene3D:3.90.228.10 | GO:A0A078FYU4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF19 | ProteinID:CDY18344 |
| ProteinID:CDY18344.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI0004EEBD94 | UniProt:A0A078FYU4 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
BnaC09g30940DBnaC09g30940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYU4]
Coordinates
chrLK032084:-:653441..655354
Molecular Weight (calculated)
49319.3 Da
IEP (calculated)
10.091
GRAVY (calculated)
-0.465
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSSTRSQK KKTKLQRDNK KNIYPKNKKK NFPTVWFSLK KSLHCKSELS DVHDLKSTKH LTTISTKRIS GVTSAGGCGG GLSGCSRSIA NLKDVIHGSK
101: RHFEKPPISG SPRSIGSNEF LNPMTHEVIL SSSTCEIKIT GVGDMASPAG ATESGGGGNK RSTTFVGMLR PGTPMNYLNH SPSYRSQASP TTARKGSERD
201: GRGGGRVEGL GSSVSCNKCG EHFNILEPAE AHHFSKHAVT ELVEGDSSRK IVEIICRTSW LKSENQCGKI DRVMKVHNMQ KTIARFEEYG ETAKIRASKL
301: QKKHPRCLAD GNELLRFHGT TVACGLGING TTSVCTAEKC CVCRIIRNGF SAKREKNNNG VGVFTASTSG RAFESVLNNE GDVDRTVRKV LIVCRVVAGR
401: VHRPVENVEE MNGLMMSGFD SLAGKVGLYT NVEELYLLNP RALLPCFVII CKP
101: RHFEKPPISG SPRSIGSNEF LNPMTHEVIL SSSTCEIKIT GVGDMASPAG ATESGGGGNK RSTTFVGMLR PGTPMNYLNH SPSYRSQASP TTARKGSERD
201: GRGGGRVEGL GSSVSCNKCG EHFNILEPAE AHHFSKHAVT ELVEGDSSRK IVEIICRTSW LKSENQCGKI DRVMKVHNMQ KTIARFEEYG ETAKIRASKL
301: QKKHPRCLAD GNELLRFHGT TVACGLGING TTSVCTAEKC CVCRIIRNGF SAKREKNNNG VGVFTASTSG RAFESVLNNE GDVDRTVRKV LIVCRVVAGR
401: VHRPVENVEE MNGLMMSGFD SLAGKVGLYT NVEELYLLNP RALLPCFVII CKP
001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP
Arabidopsis Description
AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.