Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89265 | Canola | nucleus | 97.08 | 93.44 |
| AT4G27240.1 | Thale cress | nucleus | 83.7 | 79.81 |
| KRH25897 | Soybean | cytosol | 34.06 | 78.65 |
| CDY06635 | Canola | nucleus | 74.21 | 69.32 |
| CDY28761 | Canola | nucleus | 74.94 | 68.9 |
| CDY18344 | Canola | nucleus | 72.99 | 66.23 |
| KRH55605 | Soybean | cytosol | 70.8 | 65.99 |
| VIT_19s0014g05000.t01 | Wine grape | cytosol, plastid | 67.88 | 65.03 |
| KRH22216 | Soybean | cytosol, plastid | 69.1 | 64.69 |
| KRH27121 | Soybean | cytosol, plastid | 67.88 | 63.99 |
| Solyc07g063970.2.1 | Tomato | cytosol, nucleus, peroxisome | 65.94 | 63.47 |
| PGSC0003DMT400049491 | Potato | cytosol, nucleus, peroxisome | 65.94 | 63.02 |
| Os01t0785900-01 | Rice | mitochondrion, nucleus, peroxisome, plastid | 62.77 | 53.2 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 62.04 | 53.01 |
| HORVU3Hr1G077490.2 | Barley | nucleus | 62.53 | 52.99 |
| TraesCS3B01G353600.1 | Wheat | nucleus | 61.56 | 52.06 |
| Zm00001d043243_P001 | Maize | nucleus | 62.77 | 51.09 |
| Zm00001d012605_P001 | Maize | nucleus | 61.56 | 50.5 |
| TraesCS3A01G324600.1 | Wheat | nucleus | 61.8 | 50.1 |
| EES03733 | Sorghum | nucleus | 62.29 | 48.95 |
| Os06t0683000-01 | Rice | cytosol, nucleus, plastid | 50.61 | 44.73 |
| CDX97964 | Canola | cytosol | 36.5 | 41.78 |
| CDY49785 | Canola | cytosol | 36.25 | 41.62 |
| Zm00001d014485_P001 | Maize | nucleus, plastid | 43.07 | 40.41 |
| EER88828 | Sorghum | cytosol | 41.85 | 39.81 |
| CDX76365 | Canola | cytosol | 22.87 | 36.43 |
| CDY42181 | Canola | cytosol | 22.63 | 36.05 |
| CDX73189 | Canola | nucleus | 37.47 | 35.9 |
| CDY19564 | Canola | nucleus | 22.87 | 35.61 |
| CDY12954 | Canola | nucleus | 22.87 | 35.61 |
| CDY20903 | Canola | nucleus, plastid | 36.25 | 35.56 |
| CDY06723 | Canola | nucleus, plastid | 36.25 | 35.56 |
| CDY47503 | Canola | nucleus | 37.71 | 35.55 |
| CDY63658 | Canola | cytosol | 23.6 | 34.89 |
| CDY16714 | Canola | cytosol | 23.36 | 34.53 |
| CDY13543 | Canola | nucleus | 36.25 | 34.49 |
| CDY39052 | Canola | nucleus | 36.98 | 34.08 |
| CDY16999 | Canola | nucleus, plastid | 32.85 | 32.61 |
| CDY17799 | Canola | nucleus, plastid | 32.85 | 31.11 |
| CDX97869 | Canola | golgi | 27.49 | 30.71 |
| CDY51355 | Canola | golgi | 26.76 | 29.65 |
| CDY02000 | Canola | golgi | 26.03 | 28.46 |
| CDY45464 | Canola | golgi | 26.03 | 23.06 |
Protein Annotations
| EnsemblPlants:CDY29286 | EnsemblPlantsGene:GSBRNA2T00042232001 | Gene3D:3.90.228.10 | GO:A0A078GUQ9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF19 |
| ProteinID:CDY29286 | ProteinID:CDY29286.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI0004EAE2EE |
| UniProt:A0A078GUQ9 | MapMan:15.5.15 | : | : | : | : |
Description
BnaC01g19380DBnaC01g19380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUQ9]
Coordinates
chrLK032234:+:230198..231601
Molecular Weight (calculated)
45205.7 Da
IEP (calculated)
9.171
GRAVY (calculated)
-0.530
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSRTRTEK KKKLPSVWFS LKKSLHCKSD PTDVHDPSSR SKETTKRSTY RSGCSRSIAN LKDVIHGSNR HLEKPTTCSS PRSIGSSEFL NPITHEVIIS
101: NSTSELKITA AAGDVDSSTG AREFVGTLRP GTPVHYSSSN RSQASRKASS ERDRGGAAFK QSRRDSAVVN GDDSSVSCHK CGEKFSKLED AEAHHLTEHA
201: VTELVEGDSS RKIVEMICRT SWLKTENQCG RIDRILKVHN MQKTLARFEE YRDTVKNRAS KLQKKHPRCI ADGNELLRFH GTTVSCVLGV NGCTSLCSSE
301: KCCVCRIIRN GFSVKREMNN GIGVFTASTS GRAFESIEMD GGDGTTERKA LIVCRVIAGR VHRPVENVEE MGGLNGFDSL AGKVGLYTNV EELYLLNSRA
401: LLPCFVVICK P
101: NSTSELKITA AAGDVDSSTG AREFVGTLRP GTPVHYSSSN RSQASRKASS ERDRGGAAFK QSRRDSAVVN GDDSSVSCHK CGEKFSKLED AEAHHLTEHA
201: VTELVEGDSS RKIVEMICRT SWLKTENQCG RIDRILKVHN MQKTLARFEE YRDTVKNRAS KLQKKHPRCI ADGNELLRFH GTTVSCVLGV NGCTSLCSSE
301: KCCVCRIIRN GFSVKREMNN GIGVFTASTS GRAFESIEMD GGDGTTERKA LIVCRVIAGR VHRPVENVEE MGGLNGFDSL AGKVGLYTNV EELYLLNSRA
401: LLPCFVVICK P
001: MEASSTRSEK KKKKKTIQRE NTDTQKKKKL PSVWFSLKKS LPCKSDVSDV HIPRSKKELA PISTKRTTTS SGGGVGGRSG CSRSIANLKD VIHGNQRHLE
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P
Arabidopsis Description
At4g27240 [Source:UniProtKB/TrEMBL;Acc:O81827]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.