Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026366.1-P | Field mustard | nucleus | 99.77 | 100.0 |
| CDY29286 | Canola | nucleus | 93.44 | 97.08 |
| AT4G27240.1 | Thale cress | nucleus | 82.44 | 81.67 |
| KRH25897 | Soybean | cytosol | 32.55 | 78.09 |
| CDY06635 | Canola | nucleus | 72.83 | 70.68 |
| CDY28761 | Canola | nucleus | 73.54 | 70.25 |
| CDY18344 | Canola | nucleus | 71.9 | 67.77 |
| KRH55605 | Soybean | cytosol | 68.62 | 66.44 |
| VIT_19s0014g05000.t01 | Wine grape | cytosol, plastid | 65.57 | 65.27 |
| KRH22216 | Soybean | cytosol, plastid | 66.28 | 64.46 |
| KRH27121 | Soybean | cytosol, plastid | 65.34 | 63.99 |
| Solyc07g063970.2.1 | Tomato | cytosol, nucleus, peroxisome | 63.47 | 63.47 |
| PGSC0003DMT400049491 | Potato | cytosol, nucleus, peroxisome | 63.47 | 63.02 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 59.95 | 53.22 |
| Os01t0785900-01 | Rice | mitochondrion, nucleus, peroxisome, plastid | 60.42 | 53.2 |
| HORVU3Hr1G077490.2 | Barley | nucleus | 60.42 | 53.2 |
| TraesCS3B01G353600.1 | Wheat | nucleus | 59.48 | 52.26 |
| Zm00001d043243_P001 | Maize | nucleus | 60.19 | 50.89 |
| Zm00001d012605_P001 | Maize | nucleus | 59.25 | 50.5 |
| TraesCS3A01G324600.1 | Wheat | nucleus | 59.48 | 50.1 |
| EES03733 | Sorghum | nucleus | 59.72 | 48.76 |
| Os06t0683000-01 | Rice | cytosol, nucleus, plastid | 48.95 | 44.95 |
| CDX97964 | Canola | cytosol | 35.36 | 42.06 |
| CDY49785 | Canola | cytosol | 35.13 | 41.9 |
| Zm00001d014485_P001 | Maize | nucleus, plastid | 41.45 | 40.41 |
| EER88828 | Sorghum | cytosol | 40.28 | 39.81 |
| CDX76365 | Canola | cytosol | 22.01 | 36.43 |
| CDX73189 | Canola | nucleus | 36.53 | 36.36 |
| CDY42181 | Canola | cytosol | 21.78 | 36.05 |
| CDY47503 | Canola | nucleus | 36.77 | 36.01 |
| CDY19564 | Canola | nucleus | 22.25 | 35.98 |
| CDY12954 | Canola | nucleus | 22.25 | 35.98 |
| CDY20903 | Canola | nucleus, plastid | 34.66 | 35.32 |
| CDY06723 | Canola | nucleus, plastid | 34.66 | 35.32 |
| CDY13543 | Canola | nucleus | 35.36 | 34.95 |
| CDY63658 | Canola | cytosol | 22.72 | 34.89 |
| CDY16714 | Canola | cytosol | 22.48 | 34.53 |
| CDY39052 | Canola | nucleus | 35.83 | 34.3 |
| CDY16999 | Canola | nucleus, plastid | 31.85 | 32.85 |
| CDY17799 | Canola | nucleus, plastid | 31.85 | 31.34 |
| CDX97869 | Canola | golgi | 26.46 | 30.71 |
| CDY51355 | Canola | golgi | 25.76 | 29.65 |
| CDY02000 | Canola | golgi | 25.06 | 28.46 |
| CDY45464 | Canola | golgi | 25.06 | 23.06 |
Protein Annotations
| EnsemblPlants:CDX89265 | EnsemblPlantsGene:GSBRNA2T00149473001 | Gene3D:3.90.228.10 | GO:A0A078DJ98 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF19 |
| ProteinID:CDX89265 | ProteinID:CDX89265.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI0004EDEB69 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
BnaA01g16280D
Coordinates
chrLK031858:-:600845..602506
Molecular Weight (calculated)
47024.9 Da
IEP (calculated)
9.796
GRAVY (calculated)
-0.591
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSRKRSEK KKKHQLEREN TNTQKNKKLP SVWFSLKKSL HCKSDPTDVH DPSSRSKETT KRSTYRSGCS RSIANLKDVI HGSNRHLEKP TTCSSPRSIG
101: SSEFLNPITH EVIISNSTSE LKITAAAGDK DSPAGAREFV GTLRPGTPVH YSSSHINQAS RKASSERDRG GGAAFKQSRR DSAVVNGDDS SVSCHKCGEK
201: FSNLEAAEAH HLTKHAVTEL VEGDSSRKIV EMICRTSWLK TENQCGRIDR ILKVHNMQKT LARFEEYRDT VKNRASKLQK KHPRCIADGN ELLRFHGTTV
301: SCVLGVNGCT SLCSSEKCCV CRIIRNGFSV KREMNNGIGV FTASTSGRAF ESIAMDGGDG TTERKALIVC RVIAGRVHRP VENVEEMGGL NGFDSLAGKV
401: GLYTNVEELY LLNSRALLPC FVVICKP
101: SSEFLNPITH EVIISNSTSE LKITAAAGDK DSPAGAREFV GTLRPGTPVH YSSSHINQAS RKASSERDRG GGAAFKQSRR DSAVVNGDDS SVSCHKCGEK
201: FSNLEAAEAH HLTKHAVTEL VEGDSSRKIV EMICRTSWLK TENQCGRIDR ILKVHNMQKT LARFEEYRDT VKNRASKLQK KHPRCIADGN ELLRFHGTTV
301: SCVLGVNGCT SLCSSEKCCV CRIIRNGFSV KREMNNGIGV FTASTSGRAF ESIAMDGGDG TTERKALIVC RVIAGRVHRP VENVEEMGGL NGFDSLAGKV
401: GLYTNVEELY LLNSRALLPC FVVICKP
001: MEASSTRSEK KKKKKTIQRE NTDTQKKKKL PSVWFSLKKS LPCKSDVSDV HIPRSKKELA PISTKRTTTS SGGGVGGRSG CSRSIANLKD VIHGNQRHLE
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P
Arabidopsis Description
At4g27240 [Source:UniProtKB/TrEMBL;Acc:O81827]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.