CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06635	Canola	nucleus	95.3	96.82
Bra022735.1-P	Field mustard	nucleus	99.33	93.87
AT5G54630.1	Thale cress	nucleus	88.14	83.47
CDY18344	Canola	nucleus	84.34	83.22
KRH25897	Soybean	cytosol	31.77	79.78
CDY29286	Canola	nucleus	68.9	74.94
CDX89265	Canola	nucleus	70.25	73.54
KRH55605	Soybean	cytosol	69.8	70.75
KRH22216	Soybean	cytosol, plastid	67.79	69.02
KRH27121	Soybean	cytosol, plastid	66.89	68.58
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	65.77	68.53
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	63.31	65.81
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	62.42	65.34
TraesCS3D01G317900.1	Wheat	nucleus	62.19	57.8
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	61.74	56.91
TraesCS3B01G353600.1	Wheat	nucleus	61.52	56.58
HORVU3Hr1G077490.2	Barley	nucleus	61.07	56.29
Zm00001d012605_P001	Maize	nucleus	60.63	54.09
Zm00001d043243_P001	Maize	nucleus	61.07	54.06
TraesCS3A01G324600.1	Wheat	nucleus	61.3	54.04
EES03733	Sorghum	nucleus	60.85	52.01
Os06t0683000-01	Rice	cytosol, nucleus, plastid	49.44	47.53
Zm00001d014485_P001	Maize	nucleus, plastid	40.27	41.1
EER88828	Sorghum	cytosol	39.6	40.97
CDX97964	Canola	cytosol	32.44	40.39
CDY49785	Canola	cytosol	31.54	39.39
CDY47503	Canola	nucleus	34.9	35.78
CDY42181	Canola	cytosol	20.58	35.66
CDX76365	Canola	cytosol	20.58	35.66
CDY19564	Canola	nucleus	21.03	35.61
CDY12954	Canola	nucleus	21.03	35.61
CDY20903	Canola	nucleus, plastid	33.33	35.56
CDY06723	Canola	nucleus, plastid	33.33	35.56
CDX73189	Canola	nucleus	34.0	35.43
CDY63658	Canola	cytosol	21.7	34.89
CDY13543	Canola	nucleus	33.56	34.72
CDY16714	Canola	cytosol	21.48	34.53
CDY39052	Canola	nucleus	34.23	34.3
CDY16999	Canola	nucleus, plastid	30.65	33.09
CDX97869	Canola	golgi	25.95	31.52
CDY17799	Canola	nucleus, plastid	30.43	31.34
CDY51355	Canola	golgi	25.06	30.19
CDY02000	Canola	golgi	24.38	28.99
CDY45464	Canola	golgi	24.38	23.49

Protein Annotations

EnsemblPlants:CDY28761	EnsemblPlantsGene:GSBRNA2T00041406001	Gene3D:3.90.228.10	GO:A0A078GTD4	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19	ProteinID:CDY28761
ProteinID:CDY28761.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0004EDF35D	UniProt:A0A078GTD4
MapMan:15.5.15	:	:	:	:	:

Description

BnaA02g09530DBnaA02g09530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTD4]

Coordinates

chrLK032226:+:78859..80847

Molecular Weight (calculated)

48606.4 Da

IEP (calculated)

9.974

GRAVY (calculated)

-0.415

Length

447 amino acids

Sequence
(BLAST)

001: MDDSNTRSQT KKTKKLQKDK NKNKKNNIPT VWFSLKKSLH CKSEPSDVHV PKSTKHLTTI STKRISTANS SLPSAGCGGG LSGCSRSIAN LKDVIHGSKR
101: HFEKPPISSP RSIGSNEFLN PITHEVILSN STCELKITGV GDMASPAGAT ESGGGGGGNG RSTTFVGMLR PGTPMHHLNH SASHRSHASV SLEMNRDSAV
201: NGGKYSVSCH KCGEQFNKLE AAEAHHLSKH AVTELVEGDS SRKIVEIICR TSWLKSENQC GRIDRVLKVH NMQKTLARFE EYRETVKIRA SKLQKKHPRC
301: LADGNELLRF HGTTVACGLG INGSTSLCTA EKCCVCRIIR NGFSAKREKN NGVGVFTAST SGRAFESILV EEGDGERTVT VRKVLIVCRV IAGRVHRPVE
401: NVEEMNGLMM SGFDSLAGKV GLYTNVEELY LLNPRALLPC FVVICKS

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.