Factsheet for TraesCS3A01G324600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G317900.1	Wheat	nucleus	89.35	94.18
TraesCS3B01G353600.1	Wheat	nucleus	88.36	92.18
HORVU3Hr1G077490.2	Barley	nucleus	86.98	90.93
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	79.09	82.68
Zm00001d043243_P001	Maize	nucleus	76.53	76.83
Zm00001d012605_P001	Maize	nucleus	74.75	75.65
EES03733	Sorghum	nucleus	76.73	74.38
KRH25897	Soybean	cytosol	26.04	74.16
GSMUA_Achr6P19070_001	Banana	cytosol	17.95	68.94
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	57.4	67.83
VIT_00s1356g00010.t01	Wine grape	cytosol	51.48	67.62
GSMUA_Achr6P24320_001	Banana	cytosol	44.38	66.77
KRH55605	Soybean	cytosol	57.2	65.76
GSMUA_Achr1P08590_001	Banana	nucleus	54.04	65.71
GSMUA_Achr9P24720_001	Banana	cytosol	46.75	65.65
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	55.42	65.35
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	54.83	65.11
GSMUA_Achr9P29950_001	Banana	cytosol	47.93	64.8
KRH22216	Soybean	cytosol, plastid	56.02	64.69
KRH27121	Soybean	cytosol, plastid	55.42	64.45
GSMUA_AchrUn_...	Banana	cytosol	45.76	64.44
PGSC0003DMT400055929	Potato	cytosol	52.66	64.03
Solyc02g079920.2.1	Tomato	cytosol	52.47	63.18
CDY29286	Canola	nucleus	50.1	61.8
CDY06635	Canola	nucleus	53.25	61.36
CDY28761	Canola	nucleus	54.04	61.3
AT4G27240.1	Thale cress	nucleus	50.69	59.63
Bra026366.1-P	Field mustard	nucleus	50.1	59.62
CDX89265	Canola	nucleus	50.1	59.48
Bra022735.1-P	Field mustard	nucleus	54.83	58.77
AT5G54630.1	Thale cress	nucleus	54.44	58.47
CDY18344	Canola	nucleus	50.69	56.73
GSMUA_Achr6P19060_001	Banana	nucleus	24.65	55.31
TraesCS2A01G569700.1	Wheat	nucleus	22.09	42.75
AT1G11490.2	Thale cress	mitochondrion	30.57	42.47
Bra019849.1-P	Field mustard	cytosol, mitochondrion	29.59	41.9
CDY49785	Canola	cytosol	29.19	41.34
CDX97964	Canola	cytosol	29.19	41.23
KRH10693	Soybean	nucleus	30.77	39.2
KRH21644	Soybean	nucleus	29.39	37.34
TraesCS2A01G004600.1	Wheat	nucleus	24.65	36.98
KRH58632	Soybean	nucleus	25.64	35.91
TraesCS5A01G536800.1	Wheat	cytosol	13.21	34.9
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	17.36	30.03
TraesCS6A01G248100.1	Wheat	plastid	15.98	29.24
TraesCS4A01G207500.1	Wheat	nucleus	24.85	29.03
TraesCS4A01G089900.1	Wheat	endoplasmic reticulum, golgi	22.29	26.16

Protein Annotations

EnsemblPlants:TraesCS3A01G324600.1	EnsemblPlantsGene:TraesCS3A01G324600	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19	PFscan:PS50157	ScanProsite:PS00028
SEG:seg	SUPFAM:SSF56399	MapMan:15.5.15	:	:	:

Description

No Description!

Coordinates

chr3A:-:569236029..569238116

Molecular Weight (calculated)

52874.0 Da

IEP (calculated)

9.361

GRAVY (calculated)

-0.230

Length

507 amino acids

Sequence
(BLAST)

001: MGERRRRATA VAGGDGRAEE KAAAPAPTVW FALKKSLQCR SQSSEVHVPK PKASATSGAG GGLSSIVTKR AARSGCSRSI ANLRDVIHGS KRHPGQPPSC
101: SPRSIGSSEF LNPIAHEVVL STNSRCELKI TGFGGGLGAA GGGGGPAHDA EGGGDGGGVV SSFVGTLRPG TPGPGWSHGL QYSGSCRAGS MRCTPPRSPN
201: PLLDRDGAAA TTATAHRASC EVDAAKTGGG KGSGGLSCHR CAEQFGKWEA LEAHHLSKHA GEDGICTALL LLVVVVLLQI DPDTRPVDLQ VTELVEGDSS
301: RKIVEIICRT SLLKSESSCV RIERVFKVHN TQRTLARFEE YREAVKLKAS KLAKKHPRCL ADGNELLRFH GATLACALGS AGASSLCASD KCAVCRIIRH
401: GFSSSSSSNS SSKKDGKAGV GVFTTSTSGR AFESADQQDD PAARRALLVC RVIAGRVHKP LENVREFVGQ AGFDSLAGKV GPYANIEELY LLNPRALLPC
501: FVVICKP

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.