Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G361200.1 | Wheat | plastid | 89.58 | 55.84 |
| TraesCS4B01G369900.1 | Wheat | plastid | 88.02 | 53.99 |
| Solyc08g079010.1.1 | Tomato | cytosol | 34.9 | 42.41 |
| TraesCS1A01G210700.1 | Wheat | mitochondrion, plastid | 62.5 | 40.96 |
| GSMUA_Achr5P15290_001 | Banana | nucleus | 53.12 | 40.16 |
| GSMUA_Achr2P10020_001 | Banana | cytosol | 53.12 | 38.06 |
| GSMUA_Achr7P07110_001 | Banana | cytosol | 53.12 | 36.96 |
| GSMUA_Achr1P01700_001 | Banana | nucleus | 54.69 | 35.59 |
| GSMUA_Achr5P13520_001 | Banana | cytosol, mitochondrion, peroxisome | 54.69 | 35.59 |
| GSMUA_Achr4P27010_001 | Banana | plastid | 52.6 | 35.31 |
| GSMUA_Achr4P30380_001 | Banana | cytosol | 51.56 | 34.98 |
| TraesCS6A01G248100.1 | Wheat | plastid | 48.96 | 33.94 |
| CDX76365 | Canola | cytosol | 42.19 | 31.4 |
| Bra020842.1-P | Field mustard | cytosol | 42.19 | 31.4 |
| CDY42181 | Canola | cytosol | 41.67 | 31.01 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 42.19 | 30.68 |
| CDY63658 | Canola | cytosol | 43.75 | 30.22 |
| CDY16714 | Canola | cytosol | 43.75 | 30.22 |
| Bra029455.1-P | Field mustard | cytosol | 43.75 | 30.22 |
| KRH57359 | Soybean | cytosol | 44.79 | 30.07 |
| CDY19564 | Canola | nucleus | 41.15 | 29.92 |
| CDY12954 | Canola | nucleus | 41.15 | 29.92 |
| Bra027038.1-P | Field mustard | cytosol, plastid | 41.15 | 29.92 |
| AT4G12450.1 | Thale cress | cytosol | 42.71 | 29.6 |
| KRH04088 | Soybean | cytosol | 44.79 | 29.55 |
| AT1G62520.1 | Thale cress | nucleus | 42.71 | 29.29 |
| KRH77393 | Soybean | mitochondrion | 42.71 | 28.87 |
| KRH28045 | Soybean | mitochondrion | 42.71 | 28.77 |
| VIT_02s0154g00220.t01 | Wine grape | cytosol | 42.19 | 28.32 |
| PGSC0003DMT400012224 | Potato | nucleus | 43.75 | 28.09 |
| TraesCS2A01G569700.1 | Wheat | nucleus | 38.02 | 27.86 |
| KRH37293 | Soybean | plastid | 19.79 | 24.68 |
| TraesCS2A01G004600.1 | Wheat | nucleus | 37.5 | 21.3 |
| TraesCS4A01G207500.1 | Wheat | nucleus | 35.94 | 15.9 |
| TraesCS4A01G089900.1 | Wheat | endoplasmic reticulum, golgi | 34.38 | 15.28 |
| TraesCS3A01G324600.1 | Wheat | nucleus | 34.9 | 13.21 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G536800.1 | EnsemblPlantsGene:TraesCS5A01G536800 | Gene3D:3.90.228.10 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF6 | SEG:seg |
| SUPFAM:SSF56399 | MapMan:15.5.15 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:693307794..693308372
Molecular Weight (calculated)
20045.6 Da
IEP (calculated)
7.439
GRAVY (calculated)
-0.189
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MTELPEGHPS RRVVELIFAS GWARTDGAAE VEVLFRVHST ARAVARFECA RAAARARGEA AGDARCAADG NEMMRFQCRP AAEAGGGSEV ICATVATCHQ
101: AGAARAVRTF AGSGAADAGA GGGSHEGRRG MLVCRVIAGR VRRGSTDEHP GEYDSADPGD GELVVLDRRA VLPCFLVVYR VKPPPELHSS SS
101: AGAARAVRTF AGSGAADAGA GGGSHEGRRG MLVCRVIAGR VRRGSTDEHP GEYDSADPGD GELVVLDRRA VLPCFLVVYR VKPPPELHSS SS
001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
Arabidopsis Description
Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.