Factsheet for GSMUA_Achr5P15290_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P25070_001
GSMUA_Achr7P14150_001
GSMUA_Achr7P27170_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	GSMUA_Achr7P27170_001	AT1G05410.1	21798944
AT4G12450.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr3P25070_001	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr7P14150_001	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P27010_001	Banana	plastid	84.65	75.17
GSMUA_Achr1P01700_001	Banana	nucleus	76.77	66.1
GSMUA_Achr2P10020_001	Banana	cytosol	69.29	65.67
GSMUA_Achr4P30380_001	Banana	cytosol	72.05	64.66
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	72.83	62.71
Os10t0554001-01	Rice	cytosol	42.52	59.34
GSMUA_Achr7P07110_001	Banana	cytosol	63.78	58.7
TraesCS5A01G536800.1	Wheat	cytosol	40.16	53.12
Solyc08g079010.1.1	Tomato	cytosol	29.53	47.47
TraesCS6A01G248100.1	Wheat	plastid	51.57	47.29
TraesCS6D01G230200.1	Wheat	plastid	51.18	46.43
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	52.76	45.73
TraesCS6B01G276600.1	Wheat	plastid	50.39	45.71
HORVU6Hr1G063400.2	Barley	plastid	50.39	45.55
Zm00001d017504_P001	Maize	mitochondrion	51.97	45.05
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	50.79	44.64
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	51.18	44.37
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	51.18	44.22
VIT_02s0154g00220.t01	Wine grape	cytosol	49.61	44.06
CDY42181	Canola	cytosol	44.09	43.41
CDX76365	Canola	cytosol	43.7	43.02
Bra020842.1-P	Field mustard	cytosol	43.7	43.02
KRH77393	Soybean	mitochondrion	48.03	42.96
Zm00001d047106_P001	Maize	plastid	50.0	42.91
KRH28045	Soybean	mitochondrion	48.03	42.81
AT4G12450.1	Thale cress	cytosol	46.46	42.6
KXG31078	Sorghum	plastid	52.76	42.41
Os02t0661600-00	Rice	mitochondrion	50.79	42.16
Bra029455.1-P	Field mustard	cytosol	46.06	42.09
CDY16714	Canola	cytosol	46.06	42.09
CDY63658	Canola	cytosol	46.06	42.09
Zm00001d029869_P001	Maize	mitochondrion	50.39	41.69
AT4G22560.1	Thale cress	cytosol, plastid	43.31	41.67
KXG38947	Sorghum	mitochondrion	51.97	41.25
Bra027038.1-P	Field mustard	cytosol, plastid	42.13	40.53
CDY12954	Canola	nucleus	42.13	40.53
CDY19564	Canola	nucleus	42.13	40.53
AT1G62520.1	Thale cress	nucleus	44.49	40.36
KRH04088	Soybean	cytosol	45.67	39.86
KRH57359	Soybean	cytosol	44.88	39.86
TraesCS4D01G361200.1	Wheat	plastid	47.64	39.29
PGSC0003DMT400012224	Potato	nucleus	45.28	38.46
TraesCS4B01G369900.1	Wheat	plastid	46.85	38.02
GSMUA_Achr11P...	Banana	nucleus	32.28	31.54
GSMUA_Achr6P19070_001	Banana	cytosol	16.14	31.06
GSMUA_Achr6P17990_001	Banana	nucleus	29.13	28.79
GSMUA_Achr11P...	Banana	cytosol	28.74	27.04
KRH37293	Soybean	plastid	16.14	26.62
GSMUA_Achr9P00350_001	Banana	nucleus	29.13	25.96
GSMUA_Achr7P19590_001	Banana	cytosol	7.87	23.26
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	28.74	22.05
GSMUA_Achr8P19240_001	Banana	nucleus	35.43	21.33
GSMUA_Achr8P30300_001	Banana	nucleus	32.28	21.24
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	31.89	21.04
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	30.32	20.75
GSMUA_AchrUn_...	Banana	cytosol	29.13	20.56
GSMUA_Achr6P24320_001	Banana	cytosol	27.17	20.47
GSMUA_Achr11P...	Banana	nucleus	35.43	19.61
GSMUA_Achr9P24720_001	Banana	cytosol	27.17	19.11
GSMUA_Achr9P29950_001	Banana	cytosol	27.95	18.93
GSMUA_Achr1P08590_001	Banana	nucleus	30.32	18.47
GSMUA_Achr6P19060_001	Banana	nucleus	11.02	12.39

Protein Annotations

EnsemblPlants:GSMUA_Achr5P15290_001	EnsemblPlants:GSMUA_Achr5T15290_001	EnsemblPlantsGene:GSMUA_Achr5G15290_001	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF12
SEG:seg	SUPFAM:SSF56399	UniParc:UPI000294F4B9	UniProt:M0SYQ8	MapMan:15.5.15	:

Description

zinc finger protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr5G15290_001]

Coordinates

chr5:-:11272991..11273845

Molecular Weight (calculated)

26381.5 Da

IEP (calculated)

9.958

GRAVY (calculated)

-0.073

Length

254 amino acids

Sequence
(BLAST)

001: MATGWVKSLH CKSNAVDDDV FPFPKCPSSS SSSSLPKKRR PKTGRKPKPG LAHPAASPAA GLVGPARSDP FPTLAELPAG HSSRRVVEII FSSSWSSSSS
101: GAAAAFPGEI EMLFRVHNPV RTVARFEEHR AAVRAGASRS DDARCAADGN EMMRFHCGVG GGVVYDAGVA CSVMRSAGKK VVGVRTFAGS GGAHASGGGG
201: AGRRAMLVCR VIAGRVRAES DTESQVESVS LGDGELVVFD PTAVLPCFLI IYKL

Best Arabidopsis Sequence Match ( AT1G62520.1 )
(BLAST)

001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL

Arabidopsis Description

Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.