Factsheet for Zm00001d029869_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005300_P001
Zm00001d009716_P001
Zm00001d011373_P002
Zm00001d016081_P002
Zm00001d017475_P002
Zm00001d019712_P001
Zm00001d021067_P001
Zm00001d034000_P002
Zm00001d044191_P004
Zm00001d046072_P001
Zm00001d053382_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	Zm00001d034000_P002	AT1G05410.1	21798944
AT4G12450.1	Zm00001d005300_P001	AT2G23290.1	21798944
AT4G12450.1	Zm00001d019712_P001	AT2G23290.1	21798944
AT4G12450.1	Zm00001d021067_P001	AT3G08530.1	21798944
AT4G12450.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT4G12450.1	Zm00001d009716_P001	AT4G01090.1	21798944
AT4G12450.1	Zm00001d011373_P002	AT4G01090.1	21798944
AT4G12450.1	Zm00001d016081_P002	AT4G01090.1	21798944
AT4G12450.1	Zm00001d044191_P004	AT4G01090.1	21798944
AT4G12450.1	Zm00001d046072_P001	AT4G01090.1	21798944
AT4G12450.1	Zm00001d053382_P002	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047106_P001	Maize	plastid	82.08	85.14
KXG38947	Sorghum	mitochondrion	86.32	82.81
Os10t0554001-01	Rice	cytosol	47.88	80.77
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	66.45	70.59
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	66.78	69.73
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	66.12	69.28
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	66.12	69.28
GSMUA_Achr5P15290_001	Banana	nucleus	41.69	50.39
GSMUA_Achr2P10020_001	Banana	cytosol	42.35	48.51
Solyc08g079010.1.1	Tomato	cytosol	24.43	47.47
GSMUA_Achr7P07110_001	Banana	cytosol	42.67	47.46
GSMUA_Achr4P30380_001	Banana	cytosol	43.0	46.64
GSMUA_Achr4P27010_001	Banana	plastid	43.0	46.15
GSMUA_Achr1P01700_001	Banana	nucleus	43.97	45.76
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	42.67	44.41
Zm00001d017504_P001	Maize	mitochondrion	41.37	43.34
KRH57359	Soybean	cytosol	37.46	40.21
KRH28045	Soybean	mitochondrion	36.81	39.65
VIT_02s0154g00220.t01	Wine grape	cytosol	36.48	39.16
KRH04088	Soybean	cytosol	36.81	38.83
PGSC0003DMT400012224	Potato	nucleus	37.78	38.8
KRH77393	Soybean	mitochondrion	35.83	38.73
AT4G12450.1	Thale cress	cytosol	33.88	37.55
CDY63658	Canola	cytosol	33.88	37.41
AT1G62520.1	Thale cress	nucleus	33.88	37.14
CDY16714	Canola	cytosol	33.55	37.05
Bra029455.1-P	Field mustard	cytosol	33.55	37.05
CDY42181	Canola	cytosol	30.94	36.82
CDX76365	Canola	cytosol	30.62	36.43
Bra020842.1-P	Field mustard	cytosol	30.62	36.43
CDY12954	Canola	nucleus	30.29	35.23
AT4G22560.1	Thale cress	cytosol, plastid	30.29	35.23
Bra027038.1-P	Field mustard	cytosol, plastid	30.29	35.23
CDY19564	Canola	nucleus	30.29	35.23
KRH37293	Soybean	plastid	14.33	28.57
Zm00001d026684_P001	Maize	nucleus	27.69	20.29
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	28.99	19.26
Zm00001d012605_P001	Maize	nucleus	31.27	19.16
Zm00001d043243_P001	Maize	nucleus	29.97	18.22
Zm00001d004497_P001	Maize	nucleus, plastid	27.04	18.08
Zm00001d024883_P001	Maize	nucleus	29.97	17.97
Zm00001d053006_P001	Maize	nucleus	24.76	17.92
Zm00001d014485_P001	Maize	nucleus, plastid	24.1	16.89
Zm00001d004822_P001	Maize	nucleus, plastid	15.31	13.47

Protein Annotations

EnsemblPlants:Zm00001d029869_P001	EnsemblPlants:Zm00001d029869_T001	EnsemblPlantsGene:Zm00001d029869	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF6
ProteinID:ONL99754.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI000221FCAE	UniProt:A0A1D6K889	MapMan:15.5.15

Description

zinc finger (C2H2 type) family protein

Coordinates

chr1:-:91144009..91144932

Molecular Weight (calculated)

31888.3 Da

IEP (calculated)

10.976

GRAVY (calculated)

-0.128

Length

307 amino acids

Sequence
(BLAST)

001: MATAWVRSLS CRSSYAVTDA AIAPSPAKKP PPQPLPFSCA SATAAAADVM DAVAYAHHQA RRKKLGRERE RRKETREPRP RPKKKPKPMA TKDAAAAAGA
101: PLSFMPSPAP GPPVSSAFLT MAELPEGHSS RRVVELIFAS GWADAAGRPS PSPSPAVEAL FRVHSAPRAV ARFEEARQAA RARGAAARCG ADGNEMMRFQ
201: CRAPGGGVFG AGVATCRLGA SVSAVRTFAC SGAAHASAAA ATATAGRRAM LVCRVIAGRV CPANHPSSRH AHGSAATAYD SVDMGNGELV VLDSRAVLPC
301: FLIIYKV

Best Arabidopsis Sequence Match ( AT1G62520.1 )
(BLAST)

001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL

Arabidopsis Description

Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.