Factsheet for Zm00001d017504_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005300_P001
Zm00001d009716_P001
Zm00001d011373_P002
Zm00001d016081_P002
Zm00001d017475_P002
Zm00001d019712_P001
Zm00001d021067_P001
Zm00001d034000_P002
Zm00001d044191_P004
Zm00001d046072_P001
Zm00001d053382_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	Zm00001d034000_P002	AT1G05410.1	21798944
AT4G12450.1	Zm00001d005300_P001	AT2G23290.1	21798944
AT4G12450.1	Zm00001d019712_P001	AT2G23290.1	21798944
AT4G12450.1	Zm00001d021067_P001	AT3G08530.1	21798944
AT4G12450.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT4G12450.1	Zm00001d009716_P001	AT4G01090.1	21798944
AT4G12450.1	Zm00001d011373_P002	AT4G01090.1	21798944
AT4G12450.1	Zm00001d016081_P002	AT4G01090.1	21798944
AT4G12450.1	Zm00001d044191_P004	AT4G01090.1	21798944
AT4G12450.1	Zm00001d046072_P001	AT4G01090.1	21798944
AT4G12450.1	Zm00001d053382_P002	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31078	Sorghum	plastid	89.42	82.91
TraesCS6D01G230200.1	Wheat	plastid	73.04	76.43
TraesCS6A01G248100.1	Wheat	plastid	72.01	76.17
HORVU6Hr1G063400.2	Barley	plastid	72.7	75.8
TraesCS6B01G276600.1	Wheat	plastid	72.35	75.71
Os02t0661600-00	Rice	mitochondrion	73.04	69.93
GSMUA_Achr5P15290_001	Banana	nucleus	45.05	51.97
GSMUA_Achr4P27010_001	Banana	plastid	47.78	48.95
GSMUA_Achr2P10020_001	Banana	cytosol	44.71	48.88
GSMUA_Achr7P07110_001	Banana	cytosol	45.73	48.55
GSMUA_Achr1P01700_001	Banana	nucleus	46.76	46.44
GSMUA_Achr4P30380_001	Banana	cytosol	44.71	46.29
Solyc08g079010.1.1	Tomato	cytosol	23.89	44.3
CDY42181	Canola	cytosol	37.88	43.02
Bra020842.1-P	Field mustard	cytosol	37.54	42.64
CDX76365	Canola	cytosol	37.54	42.64
AT4G12450.1	Thale cress	cytosol	40.27	42.6
CDY63658	Canola	cytosol	40.27	42.45
Zm00001d047106_P001	Maize	plastid	42.66	42.23
Bra029455.1-P	Field mustard	cytosol	39.93	42.09
CDY16714	Canola	cytosol	39.93	42.09
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	42.32	42.03
VIT_02s0154g00220.t01	Wine grape	cytosol	40.61	41.61
KRH28045	Soybean	mitochondrion	40.27	41.4
Zm00001d029869_P001	Maize	mitochondrion	43.34	41.37
AT4G22560.1	Thale cress	cytosol, plastid	37.2	41.29
KRH77393	Soybean	mitochondrion	39.59	40.85
AT1G62520.1	Thale cress	nucleus	38.91	40.71
CDY12954	Canola	nucleus	34.81	38.64
Bra027038.1-P	Field mustard	cytosol, plastid	34.81	38.64
CDY19564	Canola	nucleus	34.81	38.64
KRH04088	Soybean	cytosol	38.23	38.49
PGSC0003DMT400012224	Potato	nucleus	38.57	37.79
KRH57359	Soybean	cytosol	36.52	37.41
KRH37293	Soybean	plastid	14.33	27.27
Zm00001d026684_P001	Maize	nucleus	26.96	18.85
Zm00001d004497_P001	Maize	nucleus, plastid	29.01	18.52
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	28.67	18.18
Zm00001d024883_P001	Maize	nucleus	30.03	17.19
Zm00001d012605_P001	Maize	nucleus	29.35	17.17
Zm00001d014485_P001	Maize	nucleus, plastid	25.6	17.12
Zm00001d043243_P001	Maize	nucleus	29.35	17.03
Zm00001d053006_P001	Maize	nucleus	24.57	16.98
Zm00001d004822_P001	Maize	nucleus, plastid	16.04	13.47

Protein Annotations

EnsemblPlants:Zm00001d017504_P001	EnsemblPlants:Zm00001d017504_T001	EnsemblPlantsGene:Zm00001d017504	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF12
ProteinID:AQK73277.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI000221EE5A	UniProt:A0A1D6HF57	MapMan:15.5.15

Description

zinc finger (C2H2 type) family protein

Coordinates

chr5:-:197789156..197790037

Molecular Weight (calculated)

30295.4 Da

IEP (calculated)

11.397

GRAVY (calculated)

-0.272

Length

293 amino acids

Sequence
(BLAST)

001: MPEKPPPLRR RPTAAGSWVR SLHCKSMAAD DVAARVAAAP KKLLPRAGCG GSSGDTLNHV VVSSKPSRPK PKPKPKPSPE PKTTNKPKPV PVPPSPPPGP
101: LGPVPALTEL PAGHSSRQVV EIIFLSSWSS PPPGAPTSSS STFPGAVVEM LFRVHNPARA VARFEDYRAA VRARAGGASR SAADGNEMMR FTPAPPYGSS
201: AAAAAAAGED GPRVRTFDGS GGAHASARGP ATGRRAMFLC RVIAGRVAEG AGAHAAAAAG KEHFDSVRVG RGGELVVFDR RAVLPCFLII YKL

Best Arabidopsis Sequence Match ( AT4G12450.1 )
(BLAST)

001: MPIGWVKSLH CKSKAFDDVY HHHSNKGKLL LPSYSCRKNV RDVVNTQPGT VKKNPKPDPS LRRLCSSRRP ELDSNSHHPT RRSVSARASS ESVLPVLTDL
101: PDGHPSRNVV EIIFQSSWSS DEFPGRVEMI FKVENGSKAV TRFEEYREAV KSRSCSKVDS DRVDGSACDE NARCSADGNE MMRFFPLGPI PGGINGGAWG
201: FPGGKGAAVC TFSGSGEAHA STGGGGGRRA MLICRVIAGR VAKKGEFGSD SVAGRAGELI VFDARAVLPC FLIFFRL

Arabidopsis Description

At4g12450 [Source:UniProtKB/TrEMBL;Acc:Q9SU37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.