Factsheet for Zm00001d021067_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001814_P001
Zm00001d003009_P001
Zm00001d004784_P001
Zm00001d004785_P001
Zm00001d009161_P002
Zm00001d012851_P001
Zm00001d013039_P001
Zm00001d013042_P001
Zm00001d013489_P001
Zm00001d014007_P001
Zm00001d014898_P001
Zm00001d016490_P001
Zm00001d017287_P001
Zm00001d021067_P001
Zm00001d021864_P001
Zm00001d021867_P001
Zm00001d021869_P001
Zm00001d025872_P001
Zm00001d025877_P001
Zm00001d025878_P001
Zm00001d025884_P001
Zm00001d026437_P001
Zm00001d026630_P001
Zm00001d031997_P001
Zm00001d034527_P001
Zm00001d034543_P001
Zm00001d034842_P001
Zm00001d037949_P001
Zm00001d040717_P002
Zm00001d041491_P001
Zm00001d047985_P002
Zm00001d048410_P004
Zm00001d053028_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08530.1	Zm00001d013489_P001	AT1G03140.1	21798944
AT3G08530.1	Zm00001d021864_P001	AT1G03140.1	21798944
AT3G08530.1	Zm00001d021867_P001	AT1G03140.1	21798944
AT3G08530.1	Zm00001d025877_P001	AT1G03140.1	21798944
AT3G08530.1	Zm00001d025878_P001	AT1G03140.1	21798944
AT3G08530.1	Zm00001d025884_P001	AT1G03140.1	21798944
AT3G08530.1	Zm00001d026437_P001	AT1G52510.1	21798944
AT3G08530.1	Zm00001d047985_P002	AT2G32840.1	21798944
AT3G08530.1	Zm00001d041491_P001	AT2G34720.1	21798944
AT3G08530.1	Zm00001d004784_P001	AT3G01780.1	21187379
AT3G08530.1	Zm00001d004785_P001	AT3G01780.1	21187379
AT3G08530.1	Zm00001d053028_P001	AT3G01780.1	21187379
AT3G08530.1	Zm00001d013042_P001	AT3G04860.1	21798944
AT3G08530.1	Zm00001d021869_P001	AT3G04860.1	21798944
AT3G08530.1	Zm00001d034527_P001	AT3G04860.1	21798944
AT3G08530.1	Zm00001d037949_P001	AT3G05640.1	21798944
AT3G08530.1	Zm00001d016490_P001	AT3G07440.1	21798944
AT3G08530.1	Zm00001d021067_P001	AT3G08530.1	21187379
AT3G08530.1	Zm00001d021067_P001	AT3G08530.1	21798944
AT3G08530.1	Zm00001d003009_P001	AT3G45210.1	21798944
AT3G08530.1	Zm00001d014007_P001	AT3G45210.1	21798944
AT3G08530.1	Zm00001d017287_P001	AT3G45210.1	21798944
AT3G08530.1	Zm00001d025872_P001	AT3G45210.1	21798944
AT3G08530.1	Zm00001d048410_P004	AT3G54840.1	21798944
AT3G08530.1	Zm00001d013039_P001	AT4G02770.1	21798944
AT3G08530.1	Zm00001d034543_P001	AT4G02770.1	21798944
AT3G08530.1	Zm00001d012851_P001	AT4G24840.1	21798944
AT3G08530.1	Zm00001d034842_P001	AT4G24840.1	21798944
AT3G08530.1	Zm00001d031997_P001	AT4G35250.1	21798944
AT3G08530.1	Zm00001d009161_P002	AT5G30490.1	21798944
AT3G08530.1	Zm00001d040717_P002	AT5G30490.1	21798944
AT3G11130.1	Zm00001d001814_P001	AT2G20760.1	24529374
AT3G11130.1	Zm00001d014898_P001	AT2G20760.1	24529374
AT3G11130.1	Zm00001d026630_P001	AT2G20760.1	24529374
AT3G11130.1	Zm00001d021067_P001	AT3G08530.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043584_P001	Maize	cytosol	24.83	87.3
Zm00001d012897_P001	Maize	plastid	31.38	31.38
Zm00001d044614_P086	Maize	plastid	76.52	19.79
Zm00001d023218_P064	Maize	plastid	76.3	19.66
Zm00001d052308_P046	Maize	cytosol, plastid	76.52	19.47
Zm00001d005090_P106	Maize	plastid	76.3	19.44
Solyc05g052510.2.1	Tomato	nucleus, plastid	72.46	18.82
Solyc06g051310.2.1	Tomato	nucleus	72.23	18.81
KRH14933	Soybean	nucleus	72.01	18.76
KRH73205	Soybean	nucleus	72.23	18.75
KRH31163	Soybean	endoplasmic reticulum	71.78	18.71
AT3G08530.1	Thale cress	cytosol, plasma membrane, plastid	71.78	18.67
KRG97711	Soybean	endoplasmic reticulum, nucleus	71.33	18.59
Solyc03g096000.2.1	Tomato	nucleus	71.33	18.57
AT3G11130.1	Thale cress	cytosol, plasma membrane	71.11	18.48
Bra034166.1-P	Field mustard	cytosol	50.56	15.47
Bra001286.1-P	Field mustard	cytosol	51.02	15.23
Bra034864.1-P	Field mustard	cytosol	50.79	15.12
Bra001391.1-P	Field mustard	cytosol	48.08	14.67
Bra029698.1-P	Field mustard	cytosol	48.53	14.54
Zm00001d015676_P001	Maize	cytosol	2.93	4.66
Zm00001d009915_P001	Maize	cytosol	2.26	4.13
Zm00001d012509_P003	Maize	cytosol	3.39	3.5
VIT_16s0115g00130.t01	Wine grape	cytosol	0.68	2.59
Zm00001d026086_P002	Maize	cytosol	1.35	2.53
VIT_03s0017g00210.t01	Wine grape	cytosol, extracellular	0.23	1.89
VIT_19s0027g01340.t01	Wine grape	cytosol	0.9	1.3
CDY06504	Canola	extracellular, mitochondrion	0.23	1.06

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6I867	InterPro:ARM-type_fold	InterPro:Clathrin_H-chain/VPS_repeat	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0016192	InterPro:IPR000547	InterPro:IPR011990	ProteinID:ONM56239.1
PFAM:PF00637	PFAM:PF04129	PFscan:PS50236	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SMART:SM00299
SUPFAM:SSF48371	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000843E334	InterPro:Vps52	EnsemblPlantsGene:Zm00001d021067	EnsemblPlants:Zm00001d021067_P001
EnsemblPlants:Zm00001d021067_T001	SEG:seg	:	:	:	:

Description

Clathrin heavy chain 2

Coordinates

chr7:-:141990254..142014105

Molecular Weight (calculated)

50370.6 Da

IEP (calculated)

4.284

GRAVY (calculated)

-0.179

Length

443 amino acids

Sequence
(BLAST)

001: MNMYEFVLNK AQRLTFDSSS PNGILMFREV NPGNAPLVVG QLLDDECPED FIKGLILSVR SLLPVEPLVD ECEKSNNNPE HFLTTNPFYD SRVVGKYCEK
101: RDPTLAVVAY RRGQCDYELI NVTNKNSLFK LQARYVVERM DGDLWDKVLQ PENEYRRQLI DQVVSTALPE SKSPEQVSAA VKAFMTADLP HELIELLEKI
201: VLQNSAFNGN FNLQNLLIST AIKADPSRVM DYVNRLDNFD GPAVGEVAIE AQLYEEAFAI FKKFNLNVQA VDVLLNNIRS IERAEEFAFR VEEDVVWSQV
301: AKAQLREGLV SEAIESFIRA DDAAHFLDVI RAAEEANVYN DLVKYLLMDS SCAKELHKDG TSYSDFDLEL DSLSEIDQPA LIPHIAEAKS QKYSYEVLFR
401: SLQKLLIDTA TSEYLFTDDF FGEESIFHDI FAGLLEAQYF LVR

Best Arabidopsis Sequence Match ( AT3G08530.1 )
(BLAST)

0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY

Arabidopsis Description

CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.