Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d040717_P002 | Maize | nucleus | 87.16 | 84.85 |
| EES02887 | Sorghum | nucleus | 86.38 | 83.46 |
| TraesCS6D01G289500.1 | Wheat | nucleus | 68.48 | 70.68 |
| HORVU7Hr1G027240.3 | Barley | nucleus | 67.7 | 69.6 |
| TraesCS6B01G340000.1 | Wheat | nucleus | 67.32 | 69.48 |
| Os01t0328500-01 | Rice | nucleus | 71.21 | 69.32 |
| TraesCS6A01G310100.1 | Wheat | nucleus | 66.93 | 69.08 |
| GSMUA_Achr1P18420_001 | Banana | nucleus | 55.64 | 55.21 |
| KRH02417 | Soybean | nucleus | 54.47 | 54.69 |
| KRH50628 | Soybean | nucleus | 54.09 | 54.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.86 | 54.02 |
| VIT_05s0020g00360.t01 | Wine grape | nucleus | 54.86 | 52.81 |
| Solyc04g074800.2.1 | Tomato | nucleus | 51.36 | 51.76 |
| Bra010017.1-P | Field mustard | nucleus, plastid | 42.02 | 51.43 |
| AT5G30490.1 | Thale cress | nucleus | 46.3 | 50.42 |
| PGSC0003DMT400079246 | Potato | nucleus | 52.92 | 49.45 |
| Bra036121.1-P | Field mustard | nucleus | 44.75 | 48.73 |
| CDY00015 | Canola | nucleus, plastid | 43.97 | 48.5 |
| CDY59822 | Canola | nucleus | 44.36 | 48.31 |
| CDX85424 | Canola | nucleus, plastid | 43.97 | 47.68 |
| CDX86217 | Canola | nucleus | 43.19 | 46.84 |
Protein Annotations
| EnsemblPlants:Zm00001d009161_P002 | EnsemblPlants:Zm00001d009161_T002 | EnsemblPlantsGene:Zm00001d009161 | EntrezGene:103635106 | InterPro:BCNT-C | InterPro:IPR011421 |
| InterPro:Swc5/CFDP | ncoils:Coil | PANTHER:PTHR23227 | PANTHER:PTHR23227:SF51 | PFAM:PF07572 | PFscan:PS51279 |
| ProteinID:AQK91436.1 | SEG:seg | UniParc:UPI0008443A73 | UniProt:A0A1D6FI04 | MapMan:35.2 | : |
Description
CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 ( /.../: NCBI BLink).
Coordinates
chr8:-:40267885..40272449
Molecular Weight (calculated)
28685.0 Da
IEP (calculated)
10.233
GRAVY (calculated)
-0.954
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLDLGSKGV ACKTFPASAN TSSSHQESHN VDAKSRVEDV WKKMNGGFPN KMPKPAMTKL SSTATEKKNK PTNNWMTVLG LSPSKACNSS QGSKNGLKWT
101: QHETREDAKK LAAKALAAAK NAAAVASGRG KVEITEVRDF AVKDIEIKKL VDPNSKEAIE KAKAAGAAPS AVDSILEQIR KKQKLSVLDK TKKDWGEYKE
201: ENRGLEEELD AYKKSSNQYL DKQSFLQRTD YREFERERDA RLSMMAKRRT DMREDDV
101: QHETREDAKK LAAKALAAAK NAAAVASGRG KVEITEVRDF AVKDIEIKKL VDPNSKEAIE KAKAAGAAPS AVDSILEQIR KKQKLSVLDK TKKDWGEYKE
201: ENRGLEEELD AYKKSSNQYL DKQSFLQRTD YREFERERDA RLSMMAKRRT DMREDDV
001: MGSHEQSPEN NGSSTVSKKV ADIWQRMNEG VPNKRVNFVS TALPAKNSAN SNWKSYLGVN VKKKDTCVSD VQKSVLNHSC SEEAKSIAAA ALAAVRNATV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
Arabidopsis Description
At5g30145 [Source:UniProtKB/TrEMBL;Acc:Q8GX81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.