Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G340000.1 | Wheat | nucleus | 94.0 | 94.38 |
| TraesCS6A01G310100.1 | Wheat | nucleus | 94.0 | 94.38 |
| TraesCS6D01G289500.1 | Wheat | nucleus | 93.2 | 93.57 |
| EES02887 | Sorghum | nucleus | 76.4 | 71.8 |
| Zm00001d040717_P002 | Maize | nucleus | 72.4 | 68.56 |
| Os01t0328500-01 | Rice | nucleus | 72.0 | 68.18 |
| Zm00001d009161_P002 | Maize | nucleus | 69.6 | 67.7 |
| Bra010017.1-P | Field mustard | nucleus, plastid | 44.8 | 53.33 |
| KRH50628 | Soybean | nucleus | 54.4 | 53.12 |
| GSMUA_Achr1P18420_001 | Banana | nucleus | 54.0 | 52.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.4 | 52.11 |
| KRH02417 | Soybean | nucleus | 52.8 | 51.56 |
| Solyc04g074800.2.1 | Tomato | nucleus | 52.0 | 50.98 |
| VIT_05s0020g00360.t01 | Wine grape | nucleus | 54.4 | 50.94 |
| AT5G30490.1 | Thale cress | nucleus | 47.6 | 50.42 |
| Bra036121.1-P | Field mustard | nucleus | 47.2 | 50.0 |
| CDY59822 | Canola | nucleus | 46.4 | 49.15 |
| CDX85424 | Canola | nucleus, plastid | 45.6 | 48.1 |
| PGSC0003DMT400079246 | Potato | nucleus | 52.8 | 48.0 |
| CDX86217 | Canola | nucleus | 45.2 | 47.68 |
| CDY00015 | Canola | nucleus, plastid | 44.0 | 47.21 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G027240.3 | EnsemblPlantsGene:HORVU7Hr1G027240 | InterPro:BCNT-C | InterPro:IPR011421 | InterPro:Swc5/CFDP | PANTHER:PTHR23227 |
| PANTHER:PTHR23227:SF51 | PFAM:PF07572 | PFscan:PS51279 | SEG:seg | UniParc:UPI000296F867 | UniProt:M0VN93 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:48197395..48202080
Molecular Weight (calculated)
27803.8 Da
IEP (calculated)
9.681
GRAVY (calculated)
-1.014
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADETLPAS GDANNSEQQP HDTDKKSRVE DMWKKMNSGL PAKMPKPAMV KLKTAAKEKK TKATNNNWMT ILGLPPKKVS ANDQVPKNEQ QQTQQKTSED
101: TKKLAANALA AVKDAATAAS GRGKVEITEV RDFAGKDIEI KKLVDADSKE AVEKASAVGA APSAVDNILE QIRKKQKLSV LDKTKKDWGE YKVEKGVEEE
201: LGAYKKSSNQ YLDRQSFLKR ADYREYELER DARLSLMAKR KSESMQDDDA
101: TKKLAANALA AVKDAATAAS GRGKVEITEV RDFAGKDIEI KKLVDADSKE AVEKASAVGA APSAVDNILE QIRKKQKLSV LDKTKKDWGE YKVEKGVEEE
201: LGAYKKSSNQ YLDRQSFLKR ADYREYELER DARLSLMAKR KSESMQDDDA
001: MGSHEQSPEN NGSSTVSKKV ADIWQRMNEG VPNKRVNFVS TALPAKNSAN SNWKSYLGVN VKKKDTCVSD VQKSVLNHSC SEEAKSIAAA ALAAVRNATV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
Arabidopsis Description
At5g30145 [Source:UniProtKB/TrEMBL;Acc:Q8GX81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.