Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02417 | Soybean | nucleus | 62.55 | 65.23 |
| KRH50628 | Soybean | nucleus | 61.42 | 64.06 |
| Solyc04g074800.2.1 | Tomato | nucleus | 58.8 | 61.57 |
| GSMUA_Achr1P18420_001 | Banana | nucleus | 58.8 | 60.62 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.8 | 60.15 |
| PGSC0003DMT400079246 | Potato | nucleus | 61.8 | 60.0 |
| Bra010017.1-P | Field mustard | nucleus, plastid | 44.94 | 57.14 |
| Zm00001d009161_P002 | Maize | nucleus | 52.81 | 54.86 |
| CDX85424 | Canola | nucleus, plastid | 48.31 | 54.43 |
| HORVU7Hr1G027240.3 | Barley | nucleus | 50.94 | 54.4 |
| CDY59822 | Canola | nucleus | 47.94 | 54.24 |
| Bra036121.1-P | Field mustard | nucleus | 47.94 | 54.24 |
| CDY00015 | Canola | nucleus, plastid | 47.19 | 54.08 |
| TraesCS6B01G340000.1 | Wheat | nucleus | 50.19 | 53.82 |
| TraesCS6D01G289500.1 | Wheat | nucleus | 50.19 | 53.82 |
| Zm00001d040717_P002 | Maize | nucleus | 52.81 | 53.41 |
| Os01t0328500-01 | Rice | nucleus | 52.43 | 53.03 |
| TraesCS6A01G310100.1 | Wheat | nucleus | 49.44 | 53.01 |
| EES02887 | Sorghum | nucleus | 52.81 | 53.01 |
| CDX86217 | Canola | nucleus | 46.82 | 52.74 |
| AT5G30490.1 | Thale cress | nucleus | 44.94 | 50.85 |
Protein Annotations
| EntrezGene:100251180 | wikigene:100251180 | MapMan:35.2 | InterPro:BCNT-C | ProteinID:CBI25970 | ProteinID:CBI25970.3 |
| ncoils:Coil | UniProt:D7T649 | EMBL:FN595749 | InterPro:IPR011421 | EntrezGene:LOC100251180 | wikigene:LOC100251180 |
| PFAM:PF07572 | PFscan:PS51279 | PANTHER:PTHR23227 | PANTHER:PTHR23227:SF51 | InterPro:Swc5/CFDP | TIGR:TC54493 |
| UniParc:UPI0001BE29AF | ArrayExpress:VIT_05s0020g00360 | EnsemblPlantsGene:VIT_05s0020g00360 | EnsemblPlants:VIT_05s0020g00360.t01 | unigene:Vvi.16587 | RefSeq:XP_002262955 |
| RefSeq:XP_002262955.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:2184070..2194252
Molecular Weight (calculated)
29162.2 Da
IEP (calculated)
9.453
GRAVY (calculated)
-0.813
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTNGFDPS GDLEKKDKLS MESVKEVVAI SSSEAQPEES ERKARVDAVW EQMNKGVSVK ALKNNKPSST VNRTSHKTST GWMTYLGLGP KKRGSLQQGV
101: QQKESAITQN GTNDEAKRLA AAALSAVKDA AAAAAAASGR GKVEIVEVRD FAGEEIEVKK LVDAASKEAS EKAKGPAGTT SAVDAVLEQI KKKPKLSVLD
201: KTKMDWGGFK EDNKGLEEEL DAYKKSSNQY LDKVSFLQRA DYREFERERD ARLALHARRR PDMSEDP
101: QQKESAITQN GTNDEAKRLA AAALSAVKDA AAAAAAASGR GKVEIVEVRD FAGEEIEVKK LVDAASKEAS EKAKGPAGTT SAVDAVLEQI KKKPKLSVLD
201: KTKMDWGGFK EDNKGLEEEL DAYKKSSNQY LDKVSFLQRA DYREFERERD ARLALHARRR PDMSEDP
001: MGSHEQSPEN NGSSTVSKKV ADIWQRMNEG VPNKRVNFVS TALPAKNSAN SNWKSYLGVN VKKKDTCVSD VQKSVLNHSC SEEAKSIAAA ALAAVRNATV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
Arabidopsis Description
At5g30145 [Source:UniProtKB/TrEMBL;Acc:Q8GX81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.