Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G289500.1 | Wheat | nucleus | 97.59 | 97.59 |
| TraesCS6B01G340000.1 | Wheat | nucleus | 96.79 | 96.79 |
| HORVU7Hr1G027240.3 | Barley | nucleus | 94.38 | 94.0 |
| EES02887 | Sorghum | nucleus | 75.5 | 70.68 |
| Os01t0328500-01 | Rice | nucleus | 72.29 | 68.18 |
| Zm00001d040717_P002 | Maize | nucleus | 71.89 | 67.8 |
| Zm00001d009161_P002 | Maize | nucleus | 69.08 | 66.93 |
| Bra010017.1-P | Field mustard | nucleus, plastid | 45.78 | 54.29 |
| KRH50628 | Soybean | nucleus | 54.22 | 52.73 |
| GSMUA_Achr1P18420_001 | Banana | nucleus | 53.41 | 51.35 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.41 | 50.96 |
| AT5G30490.1 | Thale cress | nucleus | 48.19 | 50.85 |
| KRH02417 | Soybean | nucleus | 52.21 | 50.78 |
| Bra036121.1-P | Field mustard | nucleus | 46.99 | 49.58 |
| VIT_05s0020g00360.t01 | Wine grape | nucleus | 53.01 | 49.44 |
| Solyc04g074800.2.1 | Tomato | nucleus | 50.6 | 49.41 |
| CDY59822 | Canola | nucleus | 46.59 | 49.15 |
| CDX85424 | Canola | nucleus, plastid | 46.59 | 48.95 |
| CDX86217 | Canola | nucleus | 46.18 | 48.52 |
| CDY00015 | Canola | nucleus, plastid | 45.38 | 48.5 |
| PGSC0003DMT400079246 | Potato | nucleus | 51.81 | 46.91 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G310100.1 | EnsemblPlantsGene:TraesCS6A01G310100 | InterPro:BCNT-C | InterPro:IPR011421 | InterPro:Swc5/CFDP | PANTHER:PTHR23227 |
| PANTHER:PTHR23227:SF51 | PFAM:PF07572 | PFscan:PS51279 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr6A:-:546477667..546479972
Molecular Weight (calculated)
27613.6 Da
IEP (calculated)
9.570
GRAVY (calculated)
-0.961
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MVADEKLPAS GDANNSEQQL HDTDTNSRVE DMWKKMNSGL PAKMPKPAMV KLKTAAKEKK PKATNNWMTI LGLPPKMASA NDQVPKNEQQ QTQHKTSEDA
101: KKLAANALAA VRDAATAASG RGKVEITEVR DFAGKDIEIK KLVDADSKEA VEKASAAGAS PSAVDNILEQ IRKKQKLSVL DKTKKDWGEY KAEKGVEEEL
201: GAYKKSSNQY LDRQSFLKRA DYREYELERD ARLSLMAKRK SESMQDDDA
101: KKLAANALAA VRDAATAASG RGKVEITEVR DFAGKDIEIK KLVDADSKEA VEKASAAGAS PSAVDNILEQ IRKKQKLSVL DKTKKDWGEY KAEKGVEEEL
201: GAYKKSSNQY LDRQSFLKRA DYREYELERD ARLSLMAKRK SESMQDDDA
001: MGSHEQSPEN NGSSTVSKKV ADIWQRMNEG VPNKRVNFVS TALPAKNSAN SNWKSYLGVN VKKKDTCVSD VQKSVLNHSC SEEAKSIAAA ALAAVRNATV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
Arabidopsis Description
At5g30145 [Source:UniProtKB/TrEMBL;Acc:Q8GX81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.