Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g074800.2.1 | Tomato | nucleus | 88.73 | 95.69 |
| VIT_05s0020g00360.t01 | Wine grape | nucleus | 60.0 | 61.8 |
| KRH02417 | Soybean | nucleus | 51.27 | 55.08 |
| GSMUA_Achr1P18420_001 | Banana | nucleus | 51.64 | 54.83 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.55 | 53.26 |
| Zm00001d009161_P002 | Maize | nucleus | 49.45 | 52.92 |
| HORVU7Hr1G027240.3 | Barley | nucleus | 48.0 | 52.8 |
| TraesCS6D01G289500.1 | Wheat | nucleus | 47.64 | 52.61 |
| TraesCS6B01G340000.1 | Wheat | nucleus | 47.64 | 52.61 |
| KRH50628 | Soybean | nucleus | 48.73 | 52.34 |
| Bra010017.1-P | Field mustard | nucleus, plastid | 39.64 | 51.9 |
| Os01t0328500-01 | Rice | nucleus | 49.82 | 51.89 |
| TraesCS6A01G310100.1 | Wheat | nucleus | 46.91 | 51.81 |
| EES02887 | Sorghum | nucleus | 48.0 | 49.62 |
| Zm00001d040717_P002 | Maize | nucleus | 47.64 | 49.62 |
| CDX85424 | Canola | nucleus, plastid | 41.09 | 47.68 |
| CDY59822 | Canola | nucleus | 40.73 | 47.46 |
| Bra036121.1-P | Field mustard | nucleus | 40.36 | 47.03 |
| CDX86217 | Canola | nucleus | 40.0 | 46.41 |
| CDY00015 | Canola | nucleus, plastid | 39.27 | 46.35 |
| AT5G30490.1 | Thale cress | nucleus | 38.18 | 44.49 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400079246 | EnsemblPlantsGene:PGSC0003DMG400030844 | InterPro:BCNT-C | InterPro:IPR011421 | InterPro:Swc5/CFDP | ncoils:Coil |
| PANTHER:PTHR23227 | PANTHER:PTHR23227:SF51 | PFAM:PF07572 | PFscan:PS51279 | PGSC:PGSC0003DMG400030844 | SEG:seg |
| UniParc:UPI0002968A3C | UniProt:M1D1I2 | MapMan:35.2 | : | : | : |
Description
Craniofacial development protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030844]
Coordinates
chr4:-:64275959..64280149
Molecular Weight (calculated)
30550.9 Da
IEP (calculated)
9.580
GRAVY (calculated)
-0.900
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKLTAEAQL VQNNLENVDG FQTMPKQESA CLPNMQMQPE EIERKARVDA VWEQMNKGVS TRTLYSIINK PTSASNKTSS KSSSKSSSSS WMTVLGLSQK
101: KASEPGRSTP EKRLRTTQND TSEESKKLAA AALSAVKEAA TAAASAGRGK VITEVRDFAG EDVEIKKYVD ANSAEASDKG KGPAPPASAV DIILEQIKKK
201: QKLSVLDKTK KDWEGFKGEN RGMEEELDAY KKSSNQYLDR VGFLERADYR EFERERDARL AMHAKRKPES MREDY
101: KASEPGRSTP EKRLRTTQND TSEESKKLAA AALSAVKEAA TAAASAGRGK VITEVRDFAG EDVEIKKYVD ANSAEASDKG KGPAPPASAV DIILEQIKKK
201: QKLSVLDKTK KDWEGFKGEN RGMEEELDAY KKSSNQYLDR VGFLERADYR EFERERDARL AMHAKRKPES MREDY
001: MGSHEQSPEN NGSSTVSKKV ADIWQRMNEG VPNKRVNFVS TALPAKNSAN SNWKSYLGVN VKKKDTCVSD VQKSVLNHSC SEEAKSIAAA ALAAVRNATV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
Arabidopsis Description
At5g30145 [Source:UniProtKB/TrEMBL;Acc:Q8GX81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.