CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040717_P002	Maize	nucleus	90.6	91.29
Zm00001d009161_P002	Maize	nucleus	83.46	86.38
Os01t0328500-01	Rice	nucleus	76.69	77.27
TraesCS6D01G289500.1	Wheat	nucleus	72.18	77.11
HORVU7Hr1G027240.3	Barley	nucleus	71.8	76.4
TraesCS6B01G340000.1	Wheat	nucleus	70.68	75.5
TraesCS6A01G310100.1	Wheat	nucleus	70.68	75.5
KRH50628	Soybean	nucleus	54.51	56.64
KRH02417	Soybean	nucleus	54.14	56.25
GSMUA_Achr1P18420_001	Banana	nucleus	53.38	54.83
GSMUA_AchrUn_...	Banana	nucleus	53.38	54.41
Bra010017.1-P	Field mustard	nucleus, plastid	42.86	54.29
VIT_05s0020g00360.t01	Wine grape	nucleus	53.01	52.81
AT5G30490.1	Thale cress	nucleus	46.62	52.54
Bra036121.1-P	Field mustard	nucleus	45.49	51.27
Solyc04g074800.2.1	Tomato	nucleus	48.87	50.98
CDY59822	Canola	nucleus	45.11	50.85
CDY00015	Canola	nucleus, plastid	44.36	50.64
CDX86217	Canola	nucleus	44.36	49.79
CDX85424	Canola	nucleus, plastid	44.36	49.79
PGSC0003DMT400079246	Potato	nucleus	49.62	48.0

Protein Annotations

EnsemblPlants:EES02887	EnsemblPlantsGene:SORBI_3003G152700	InterPro:BCNT-C	InterPro:IPR011421	InterPro:Swc5/CFDP	ncoils:Coil
PANTHER:PTHR23227	PANTHER:PTHR23227:SF51	PFAM:PF07572	PFscan:PS51279	ProteinID:EES02887	ProteinID:EES02887.2
SEG:seg	unigene:Sbi.21373	UniParc:UPI0003C68D47	UniProt:C5XIY4	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr3:+:16223028..16226470

Molecular Weight (calculated)

29067.1 Da

IEP (calculated)

9.933

GRAVY (calculated)

-0.947

Length

266 amino acids

Sequence
(BLAST)

001: MASTSSAGDV GGSGSKGAAA DKTLPASANT SSSNQESHDA DAKSRVEDIW KKMNSGLPNK MPKPAMTKLS TAAKEKKIKS TNNWMTVLGL SPSKSCTVDQ
101: GSKNGQQQTQ HEMSEDAKKL AAKALAAAKN AAAMASGRGK VEITEVRDFA GKDIEIKKLV DANSKEAIEK AKAAGAAPSA VDNILEQIRK KQKLSVLDKT
201: KKDWGEYKEE NRGLEEELDA YKKSSNQYLD KQSFLQRTDY REFERERDAR LSLMSKRKTD MREDDV

Best Arabidopsis Sequence Match ( AT5G30490.1 )
(BLAST)

001: MGSHEQSPEN NGSSTVSKKV ADIWQRMNEG VPNKRVNFVS TALPAKNSAN SNWKSYLGVN VKKKDTCVSD VQKSVLNHSC SEEAKSIAAA ALAAVRNATV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV

Arabidopsis Description

At5g30145 [Source:UniProtKB/TrEMBL;Acc:Q8GX81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.