Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86217 | Canola | nucleus | 94.76 | 83.97 |
| CDX85424 | Canola | nucleus, plastid | 92.86 | 82.28 |
| Bra036121.1-P | Field mustard | nucleus | 82.38 | 73.31 |
| AT5G30490.1 | Thale cress | nucleus | 80.95 | 72.03 |
| KRH02417 | Soybean | nucleus | 58.1 | 47.66 |
| KRH50628 | Soybean | nucleus | 57.14 | 46.88 |
| TraesCS6A01G310100.1 | Wheat | nucleus | 54.29 | 45.78 |
| TraesCS6B01G340000.1 | Wheat | nucleus | 54.29 | 45.78 |
| TraesCS6D01G289500.1 | Wheat | nucleus | 54.29 | 45.78 |
| VIT_05s0020g00360.t01 | Wine grape | nucleus | 57.14 | 44.94 |
| HORVU7Hr1G027240.3 | Barley | nucleus | 53.33 | 44.8 |
| Os01t0328500-01 | Rice | nucleus | 54.76 | 43.56 |
| EES02887 | Sorghum | nucleus | 54.29 | 42.86 |
| Solyc04g074800.2.1 | Tomato | nucleus | 51.9 | 42.75 |
| GSMUA_Achr1P18420_001 | Banana | nucleus | 52.38 | 42.47 |
| Zm00001d009161_P002 | Maize | nucleus | 51.43 | 42.02 |
| Zm00001d040717_P002 | Maize | nucleus | 52.38 | 41.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.95 | 41.0 |
| PGSC0003DMT400079246 | Potato | nucleus | 51.9 | 39.64 |
Protein Annotations
Description
AT5G30490 (E=7e-069) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bucentaur or craniofacial development (InterPro:IPR011421); Has 246 Blast hits to 239 proteins in 110 species: Archae - 0; Bacteria - 14; Metazoa - 103; Fungi - 65; Plants - 25; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Coordinates
chrA06:+:18661976..18662945
Molecular Weight (calculated)
23261.2 Da
IEP (calculated)
9.481
GRAVY (calculated)
-0.850
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MWERMNAGVP KKRVNFHSKS ATALPAKNSA NNSNCRSYLG VDAKKKNEHT IVLKEDSVSD NSCSEEAKSI AAAALAAVRN ATATAAAASS RGKVEITEVK
101: DFAGQEIEVK RLVEAGSKEA SSSASTSGVD AVLEQIKKKQ KLSVLDKTKK DWGEYKEENK GVEDELDKYK KSSDQYLDKV SFLERADYRQ FEKERDVRLA
201: LQSKRKHDDV
101: DFAGQEIEVK RLVEAGSKEA SSSASTSGVD AVLEQIKKKQ KLSVLDKTKK DWGEYKEENK GVEDELDKYK KSSDQYLDKV SFLERADYRQ FEKERDVRLA
201: LQSKRKHDDV
001: MGSHEQSPEN NGSSTVSKKV ADIWQRMNEG VPNKRVNFVS TALPAKNSAN SNWKSYLGVN VKKKDTCVSD VQKSVLNHSC SEEAKSIAAA ALAAVRNATV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
Arabidopsis Description
At5g30145 [Source:UniProtKB/TrEMBL;Acc:Q8GX81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.