CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02417	Soybean	nucleus	89.45	89.45
VIT_05s0020g00360.t01	Wine grape	nucleus	64.06	61.42
Bra010017.1-P	Field mustard	nucleus, plastid	46.88	57.14
Os01t0328500-01	Rice	nucleus	56.64	54.92
TraesCS6D01G289500.1	Wheat	nucleus	53.12	54.62
EES02887	Sorghum	nucleus	56.64	54.51
HORVU7Hr1G027240.3	Barley	nucleus	53.12	54.4
CDY59822	Canola	nucleus	50.0	54.24
AT5G30490.1	Thale cress	nucleus	50.0	54.24
TraesCS6A01G310100.1	Wheat	nucleus	52.73	54.22
Zm00001d009161_P002	Maize	nucleus	54.3	54.09
TraesCS6B01G340000.1	Wheat	nucleus	52.34	53.82
Bra036121.1-P	Field mustard	nucleus	49.61	53.81
GSMUA_Achr1P18420_001	Banana	nucleus	53.91	53.28
Zm00001d040717_P002	Maize	nucleus	54.69	53.03
CDY00015	Canola	nucleus, plastid	47.66	52.36
CDX86217	Canola	nucleus	48.44	52.32
CDX85424	Canola	nucleus, plastid	48.44	52.32
GSMUA_AchrUn_...	Banana	nucleus	53.12	52.11
Solyc04g074800.2.1	Tomato	nucleus	51.17	51.37
PGSC0003DMT400079246	Potato	nucleus	52.34	48.73

Protein Annotations

EMBL:ACUP02004709	EnsemblPlants:KRH50628	EnsemblPlantsGene:GLYMA_07G232800	EntrezGene:100781050	InterPro:BCNT-C	InterPro:IPR011421
InterPro:Swc5/CFDP	ncoils:Coil	PANTHER:PTHR23227	PANTHER:PTHR23227:SF51	PFAM:PF07572	PFscan:PS51279
ProteinID:KRH50628	ProteinID:KRH50628.1	SEG:seg	UniParc:UPI00023387EB	UniProt:I1KMJ3	MapMan:35.2

Description

hypothetical protein

Coordinates

chr7:+:41366478..41369167

Molecular Weight (calculated)

28270.1 Da

IEP (calculated)

9.180

GRAVY (calculated)

-0.869

Length

256 amino acids

Sequence
(BLAST)

001: MSSADTVNAS SAESVKEPVI GSSLEAKQDD TEIKSQVDAM WEQMNKGVSN KTLNRFTSKP NSAPKKTAKK TSSNWMSYLA LAPKATESLG QGASKNGPGI
101: LQSSTSDEAK KLAAAALAAV KDDAAMAASS RGKLVITEVR DFAGQEIEVK KLVDSDSKEA MERAKAPPPS AVDTVLEQIK KKQKLSVLDK TKKDWGEFKE
201: EKRLEEELDA YKKSSNQYLD KVSFLQRADY REFERERDAR LALQSRKRPD NMQEDD

Best Arabidopsis Sequence Match ( AT5G30490.1 )
(BLAST)

001: MGSHEQSPEN NGSSTVSKKV ADIWQRMNEG VPNKRVNFVS TALPAKNSAN SNWKSYLGVN VKKKDTCVSD VQKSVLNHSC SEEAKSIAAA ALAAVRNATV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV

Arabidopsis Description

At5g30145 [Source:UniProtKB/TrEMBL;Acc:Q8GX81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.