CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0104766-00	Rice	plasma membrane	28.72	4.67
Os11t0104866-00	Rice	plasma membrane	28.72	4.67
CDY36318	Canola	cytosol	28.72	3.67
CDY36317	Canola	cytosol	9.57	3.56
CDY08549	Canola	cytosol	42.55	2.59
CDY27997	Canola	cytosol	41.49	2.44
CDY35984	Canola	cytosol	41.49	2.43
CDY00724	Canola	cytosol	42.55	2.38
CDY36301	Canola	cytosol	42.55	2.38
CDX73889	Canola	cytosol	42.55	2.38
CDY00997	Canola	extracellular	42.55	2.34
CDY07954	Canola	cytosol	40.43	2.27
CDX74011	Canola	cytosol	40.43	2.26
KRG97711	Soybean	endoplasmic reticulum, nucleus	40.43	2.24
EES07849	Sorghum	plastid	40.43	2.22
KXG22761	Sorghum	plastid	40.43	2.22
KRH14933	Soybean	nucleus	39.36	2.18
KRH31163	Soybean	endoplasmic reticulum	39.36	2.18
KRH73205	Soybean	nucleus	39.36	2.17
TraesCS4A01G182300.1	Wheat	extracellular, golgi	39.36	2.16
TraesCS4D01G130900.1	Wheat	golgi, unclear	39.36	2.16
TraesCS4B01G136100.2	Wheat	golgi, unclear	39.36	2.14
TraesCS5D01G158800.1	Wheat	plastid	38.3	2.11
TraesCS5A01G153500.1	Wheat	golgi, unclear	38.3	2.11
TraesCS5B01G152300.1	Wheat	unclear	38.3	2.11
HORVU4Hr1G024710.4	Barley	plastid	39.36	2.08
HORVU5Hr1G048010.1	Barley	plastid	38.3	2.0
Os12t0104800-01	Rice	cytosol	2.13	1.64
Os11t0104900-00	Rice	plasma membrane	10.64	1.43
Zm00001d021067_P001	Maize	cytosol, mitochondrion	1.06	0.23
CDY22157	Canola	cytosol	0.0	0.0
CDY22158	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.110	MapMan:35.2	GO:A0A078F0V2	EnsemblPlants:CDY06504	ProteinID:CDY06504	ProteinID:CDY06504.1
InterPro:Clathrin_H-chain_N	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0016020	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	EnsemblPlantsGene:GSBRNA2T00122603001	InterPro:IPR016025
SUPFAM:SSF50989	TMHMM:TMhelix	UniParc:UPI0004EE50FF	:	:	:

Description

BnaC06g11400D

Coordinates

chrLK031970:+:917224..918321

Molecular Weight (calculated)

10962.6 Da

IEP (calculated)

8.209

GRAVY (calculated)

0.280

Length

94 amino acids

Sequence
(BLAST)

1: MFCCTHFWKW ITPKMMGLAT KTYVYHWSIE GLYLYLLHTV VFSISCICKK ISDETTVEIK LPKYFLSCSL VHLSEILRPL GAMQMQSQSL GDNY

Best Arabidopsis Sequence Match ( AT3G11130.1 )
(BLAST)

0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY

Arabidopsis Description

CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.