Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36318 | Canola | cytosol | 47.31 | 99.32 |
| CDY36317 | Canola | cytosol | 15.99 | 97.63 |
| Bra034864.1-P | Field mustard | cytosol | 89.19 | 92.61 |
| CDY00997 | Canola | extracellular | 99.29 | 89.87 |
| CDY36301 | Canola | cytosol | 96.44 | 88.69 |
| CDY00724 | Canola | cytosol | 96.18 | 88.45 |
| AT3G11130.1 | Thale cress | cytosol, plasma membrane | 97.41 | 88.27 |
| CDX73889 | Canola | cytosol | 96.05 | 88.18 |
| Os12t0104766-00 | Rice | plasma membrane | 32.95 | 88.06 |
| Os11t0104866-00 | Rice | plasma membrane | 32.82 | 87.72 |
| Os11t0104900-00 | Rice | plasma membrane | 39.61 | 87.55 |
| CDX74011 | Canola | cytosol | 94.89 | 87.37 |
| CDY07954 | Canola | cytosol | 94.69 | 87.34 |
| CDY27997 | Canola | cytosol | 85.37 | 82.44 |
| KRH31163 | Soybean | endoplasmic reticulum | 90.23 | 82.0 |
| KRH73205 | Soybean | nucleus | 90.55 | 81.96 |
| KRG97711 | Soybean | endoplasmic reticulum, nucleus | 90.16 | 81.94 |
| CDY35984 | Canola | cytosol | 85.11 | 81.88 |
| KRH14933 | Soybean | nucleus | 90.03 | 81.82 |
| KXG22761 | Sorghum | plastid | 89.58 | 80.94 |
| EES07849 | Sorghum | plastid | 89.45 | 80.87 |
| TraesCS5D01G158800.1 | Wheat | plastid | 88.41 | 79.98 |
| TraesCS4A01G182300.1 | Wheat | extracellular, golgi | 88.74 | 79.94 |
| TraesCS5A01G153500.1 | Wheat | golgi, unclear | 88.35 | 79.92 |
| TraesCS5B01G152300.1 | Wheat | unclear | 88.35 | 79.92 |
| TraesCS4D01G130900.1 | Wheat | golgi, unclear | 88.54 | 79.77 |
| CDY22157 | Canola | cytosol | 4.01 | 79.49 |
| TraesCS4B01G136100.2 | Wheat | golgi, unclear | 88.67 | 79.1 |
| HORVU4Hr1G024710.4 | Barley | plastid | 88.61 | 76.87 |
| HORVU5Hr1G048010.1 | Barley | plastid | 88.16 | 75.54 |
| Os12t0104800-01 | Rice | cytosol | 5.5 | 69.67 |
| CDY06504 | Canola | extracellular, mitochondrion | 2.59 | 42.55 |
| CDY22158 | Canola | cytosol | 3.88 | 31.58 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:1.25.40.730 | Gene3D:2.130.10.110 | MapMan:22.1.1.1 | GO:A0A078F689 | UniProt:A0A078F689 |
| InterPro:ARM-type_fold | EnsemblPlants:CDY08549 | ProteinID:CDY08549 | ProteinID:CDY08549.1 | InterPro:Clathrin_H-chain/VPS_repeat | InterPro:Clathrin_H-chain_N |
| InterPro:Clathrin_H-chain_linker_core | InterPro:Clathrin_H-chain_propeller_rpt | InterPro:Clathrin_heavy_chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 |
| GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032051 | GO:GO:0048268 | GO:GO:0071439 | EnsemblPlantsGene:GSBRNA2T00000331001 |
| InterPro:IPR000547 | InterPro:IPR011990 | InterPro:IPR016025 | PFAM:PF00637 | PFAM:PF01394 | PFAM:PF09268 |
| PFAM:PF13838 | PIRSF:PIRSF002290 | PFscan:PS50236 | PANTHER:PTHR10292 | PANTHER:PTHR10292:SF1 | SMART:SM00299 |
| SUPFAM:SSF48371 | SUPFAM:SSF50989 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0004EECF6A | SEG:seg | : |
Description
BnaA05g27850DClathrin heavy chain [Source:UniProtKB/TrEMBL;Acc:A0A078F689]
Coordinates
chrLK031986:+:673200..681310
Molecular Weight (calculated)
174891.0 Da
IEP (calculated)
5.012
GRAVY (calculated)
-0.142
Length
1545 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVSFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVLGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFSKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD SCIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFFDA EKAKTCLMEA KLPDARPLAY ARLFNCRYVV
0801: ERMDGDLWDK VLLEENEYRR QLIDQVVSTA LPESKSPEQV SAAVKAFMTA DLPHELIELL EKIVLQNSAF SGNFNLQNLL ILTAIKADPS RVMDYINRLD
0901: NFDGPAVGDV AVDAQLYEEA FAIFKKFNLN VQAVNVLLDN VRSIERAVEF AFRVEEDSVW SQVAKAQLRD GLVSDAIESF IRADDATHFL EVIRATEDAN
1001: VYDDLVKYLL MVRQKVKEPK VDSELIYAYA KIERLGEIEE FILMPNVANL QQVGDRLYDE ALYEAAKIIY AFISNWGKLA VTLVKLQQFQ GAVDAARKAN
1101: SAKTWKEVCF ACVDAEEFRL AQICGLNIII QVDDLEEVSE YYQNRGCFNE LISLMESGLG LERAHMGIFT ELGVLYARYR YEKLMEHIKL FSTRLNIPKL
1201: IRACDEQQHW QELTYLYIQY DEFDNAATTV MNHSPEAWEH MQFKDIVAKV ANVELYYKAV HFYLQEHPDI INDLLNVLAL RLDHTRVVDI MRKAGQLRLI
1301: KPYMVAVQSN NVSAVNEALN EIYVEEEDYD RLRESIDLHD SFDQIGLAQK IEKHELVEMR RVAAYIYKKA GRWKQSIALS KKDNMYKDCM ETASQSGDHD
1401: LAEQLLVYFI EQGKKECFAT CLFVCYDLIR PDVALEHAWI NNMLDFAFPY LLQFIREYSG KVDELIKDKL EAQKEVKAKE QEEKDVMSQQ NMYAQLLPLA
1501: LPAPPMPGMG GGPGMGGGYG PPPQMGGMPG MPPMPPYGMP PMGGY
0101: AKAKLKSHQM PEQVSFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVLGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFSKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD SCIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFFDA EKAKTCLMEA KLPDARPLAY ARLFNCRYVV
0801: ERMDGDLWDK VLLEENEYRR QLIDQVVSTA LPESKSPEQV SAAVKAFMTA DLPHELIELL EKIVLQNSAF SGNFNLQNLL ILTAIKADPS RVMDYINRLD
0901: NFDGPAVGDV AVDAQLYEEA FAIFKKFNLN VQAVNVLLDN VRSIERAVEF AFRVEEDSVW SQVAKAQLRD GLVSDAIESF IRADDATHFL EVIRATEDAN
1001: VYDDLVKYLL MVRQKVKEPK VDSELIYAYA KIERLGEIEE FILMPNVANL QQVGDRLYDE ALYEAAKIIY AFISNWGKLA VTLVKLQQFQ GAVDAARKAN
1101: SAKTWKEVCF ACVDAEEFRL AQICGLNIII QVDDLEEVSE YYQNRGCFNE LISLMESGLG LERAHMGIFT ELGVLYARYR YEKLMEHIKL FSTRLNIPKL
1201: IRACDEQQHW QELTYLYIQY DEFDNAATTV MNHSPEAWEH MQFKDIVAKV ANVELYYKAV HFYLQEHPDI INDLLNVLAL RLDHTRVVDI MRKAGQLRLI
1301: KPYMVAVQSN NVSAVNEALN EIYVEEEDYD RLRESIDLHD SFDQIGLAQK IEKHELVEMR RVAAYIYKKA GRWKQSIALS KKDNMYKDCM ETASQSGDHD
1401: LAEQLLVYFI EQGKKECFAT CLFVCYDLIR PDVALEHAWI NNMLDFAFPY LLQFIREYSG KVDELIKDKL EAQKEVKAKE QEEKDVMSQQ NMYAQLLPLA
1501: LPAPPMPGMG GGPGMGGGYG PPPQMGGMPG MPPMPPYGMP PMGGY
0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
Arabidopsis Description
CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.