Factsheet for AT3G11130.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73889	Canola	cytosol	96.77	98.04
CDY00724	Canola	cytosol	96.54	97.98
Bra034864.1-P	Field mustard	cytosol	85.45	97.92
CDY36301	Canola	cytosol	96.36	97.8
AT3G08530.1	Thale cress	cytosol, plasma membrane, plastid	97.6	97.71
Bra034166.1-P	Field mustard	cytosol	82.93	97.65
CDY00997	Canola	extracellular	97.6	97.48
CDY08549	Canola	cytosol	88.27	97.41
Bra001391.1-P	Field mustard	cytosol	81.23	95.39
KRG97711	Soybean	endoplasmic reticulum, nucleus	92.14	92.41
Solyc06g051310.2.1	Tomato	nucleus	92.08	92.3
KRH31163	Soybean	endoplasmic reticulum	92.02	92.29
Solyc05g052510.2.1	Tomato	nucleus, plastid	92.26	92.2
KRH14933	Soybean	nucleus	91.55	91.82
KRH73205	Soybean	nucleus	91.79	91.68
Solyc03g096000.2.1	Tomato	nucleus	91.32	91.48
KXG22761	Sorghum	plastid	90.73	90.47
EES07849	Sorghum	plastid	90.67	90.46
TraesCS5D01G158800.1	Wheat	plastid	89.85	89.7
TraesCS5B01G152300.1	Wheat	unclear	89.79	89.64
TraesCS5A01G153500.1	Wheat	golgi, unclear	89.79	89.64
TraesCS4A01G182300.1	Wheat	extracellular, golgi	89.97	89.45
TraesCS4D01G130900.1	Wheat	golgi, unclear	89.85	89.33
TraesCS4B01G136100.2	Wheat	golgi, unclear	89.79	88.39
Os12t0104766-00	Rice	plasma membrane	29.79	87.89
Os11t0104866-00	Rice	plasma membrane	29.68	87.54
Os11t0104900-00	Rice	plasma membrane	35.72	87.12
HORVU4Hr1G024710.4	Barley	plastid	89.74	85.91
HORVU5Hr1G048010.1	Barley	plastid	89.56	84.69
Zm00001d021067_P001	Maize	cytosol, mitochondrion	18.48	71.11
Os12t0104800-01	Rice	cytosol	4.93	68.85
VIT_03s0017g00210.t01	Wine grape	cytosol, extracellular	1.94	62.26
VIT_16s0115g00130.t01	Wine grape	cytosol	4.16	61.21
VIT_19s0027g01340.t01	Wine grape	cytosol	8.56	47.56

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	Gene3D:2.130.10.110	MapMan:22.1.1.1	EntrezGene:820284	UniProt:A0A178V904
ProteinID:AAF01510.1	ProteinID:AAG50967.1	ProteinID:AEE75005.1	EMBL:AK229443	EMBL:AK229949	InterPro:ARM-type_fold
ArrayExpress:AT3G11130	EnsemblPlantsGene:AT3G11130	RefSeq:AT3G11130	TAIR:AT3G11130	RefSeq:AT3G11130-TAIR-G	EnsemblPlants:AT3G11130.1
TAIR:AT3G11130.1	Unigene:At.26828	InterPro:Clathrin_H-chain/VPS_repeat	InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt
InterPro:Clathrin_heavy_chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0006897
GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0010118	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0032051
GO:GO:0048268	GO:GO:0071439	GO:GO:0072583	InterPro:IPR000547	InterPro:IPR011990	InterPro:IPR016025
RefSeq:NP_187724.2	ProteinID:OAP02181.1	PFAM:PF00637	PFAM:PF01394	PFAM:PF09268	PFAM:PF13838
PIRSF:PIRSF002290	PO:PO:0000005	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0025195
PO:PO:0025281	PFscan:PS50236	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	UniProt:Q0WNJ6	SMART:SM00299
SUPFAM:SSF48371	SUPFAM:SSF50989	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000196C07	SEG:seg	:

Description

CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]

Coordinates

chr3:-:3482149..3492065

Molecular Weight (calculated)

193256.0 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.156

Length

1705 amino acids

Sequence
(BLAST)

0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.