Factsheet for Bra001391.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000163.1-P
Bra006952.1-P
Bra017039.1-P
Bra028535.1-P
Bra031138.1-P
Bra033472.1-P
Bra036500.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11130.1	Bra031138.1-P	AT2G20760.1	24529374
AT3G11130.1	Bra036500.1-P	AT2G20760.1	24529374
AT3G11130.1	Bra000163.1-P	AT2G40060.1	24529374
AT3G11130.1	Bra017039.1-P	AT2G40060.1	24529374
AT3G11130.1	Bra033472.1-P	AT3G51890.1	24529374
AT3G11130.1	Bra006952.1-P	AT3G52850.1	16905657
AT3G11130.1	Bra028535.1-P	AT3G52850.1	16905657

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034166.1-P	Field mustard	cytosol	95.59	95.86
Bra034864.1-P	Field mustard	cytosol	95.39	93.08
Bra001286.1-P	Field mustard	cytosol	94.08	92.05
Os12t0104766-00	Rice	plasma membrane	34.57	86.85
Os11t0104900-00	Rice	plasma membrane	41.67	86.55
Os11t0104866-00	Rice	plasma membrane	34.37	86.33
CDX73889	Canola	cytosol	97.38	84.02
Bra029698.1-P	Field mustard	cytosol	84.37	82.83
AT3G11130.1	Thale cress	cytosol, plasma membrane	95.39	81.23
Solyc05g052510.2.1	Tomato	nucleus, plastid	89.6	76.26
Solyc06g051310.2.1	Tomato	nucleus	89.05	76.01
KRG97711	Soybean	endoplasmic reticulum, nucleus	88.64	75.71
KRH31163	Soybean	endoplasmic reticulum	88.36	75.47
KRH73205	Soybean	nucleus	88.64	75.4
KRH14933	Soybean	nucleus	88.09	75.24
Solyc03g096000.2.1	Tomato	nucleus	88.09	75.15
KXG22761	Sorghum	plastid	86.85	73.74
EES07849	Sorghum	plastid	86.71	73.67
TraesCS5D01G158800.1	Wheat	plastid	86.16	73.24
TraesCS5A01G153500.1	Wheat	golgi, unclear	86.09	73.19
TraesCS5B01G152300.1	Wheat	unclear	86.09	73.19
TraesCS4A01G182300.1	Wheat	extracellular, golgi	86.43	73.18
TraesCS4D01G130900.1	Wheat	golgi, unclear	86.29	73.06
TraesCS4B01G136100.2	Wheat	golgi, unclear	86.43	72.46
Os12t0104800-01	Rice	cytosol	5.92	70.49
HORVU4Hr1G024710.4	Barley	plastid	86.23	70.3
HORVU5Hr1G048010.1	Barley	plastid	85.81	69.11
VIT_03s0017g00210.t01	Wine grape	cytosol, extracellular	2.41	66.04
VIT_16s0115g00130.t01	Wine grape	cytosol	4.82	60.34
Zm00001d021067_P001	Maize	cytosol, mitochondrion	14.67	48.08
VIT_19s0027g01340.t01	Wine grape	cytosol	9.99	47.23

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	Gene3D:2.130.10.110	MapMan:22.1.1.1	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra001391
EnsemblPlants:Bra001391.1	EnsemblPlants:Bra001391.1-P	InterPro:Clathrin_H-chain/VPS_repeat	InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt
InterPro:Clathrin_heavy_chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
GO:GO:0032051	GO:GO:0048268	GO:GO:0071439	InterPro:IPR000547	InterPro:IPR011990	InterPro:IPR016025
UniProt:M4CB12	PFAM:PF00637	PFAM:PF01394	PFAM:PF09268	PFAM:PF13838	PIRSF:PIRSF002290
PFscan:PS50236	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SMART:SM00299	SUPFAM:SSF48371	SUPFAM:SSF50989
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000254070C	SEG:seg	:	:	:

Description

AT3G11130 (E=0.0) | clathrin heavy chain, putative

Coordinates

chrA03:-:16138877..16147056

Molecular Weight (calculated)

163564.0 Da

IEP (calculated)

4.965

GRAVY (calculated)

-0.101

Length

1452 amino acids

Sequence
(BLAST)

0001: MAAANAPITM KEVLTLPSVG INQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHGAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGIPRTPDT VAKFQSVPVQ AGQTPPLLQY FGALLTRGKI NSYESLVLSR LVVNQNKKSL LENWLAEDKL ECSEELGDLV KVGYTPDYMF LLQTILRSDP
0501: QGAVNFALMM SQMEGGCPVD YNTITDLFLQ RNLIREATAF LLDVLKPNLP EHAFLQTKVL EINLVTFPNV AGAILANGMF SHYDLPRVAQ LCEKAGLYIQ
0601: SLKILMIYNV FPLCDSEDPE IHFKYIEAAA KTAKLPDARP LINVCDRFGF VPDLTHYLYT NNMLRYIEGY VQKVNPGNAP LVVGQLLDDE CPEDFIKGLI
0701: LSVRSLLPVE PLVEECEKRN RLRLLTQFLE HLVSEGSQDV HVHNALAVKA FMTADLPHEL IELLEKIVLQ NSAFSGNFNL QNLLILTAIK ADPSRVMDYI
0801: NRLDNFDGPA VGEVAVDAQL YEEAFAIFKK FNLNVQAVNV LLDHVGSIER AVEFAFRVEE DSVWTQVAKA QLRDGLVSDA IESFIRADDA THFLEVIRAC
0901: EDTDVYDDLV RYLLMVRQKV KEPKVDSELI YAYAKIERLG EIEEFILMPN VANLPNVGDR LYDEALYEAA KIIYAFTSNW AKLAVTLVKL QQFQSAVDAA
1001: RKANSAKTWK EVCFACVDAE EFRLAQICGL NVIIQVDDLE EVSEYYQNRG CFSELISLME SGLGLERAHM GIFTELGVLY ARYRYEKLME HIKLFSTRLN
1101: IPKLIRACDE QQHWQELTYL YIQYDEFDNA ATTVMNHSPE AWEHMQFKDI VAKVANVELY YKAVHFYLQE HPDIINDLLN VLALRLDHTR VVDIMRKAGQ
1201: LRLIKPYMVA VQSNNVSAVN EALNEIYVEE EDYDRLREST DLHDSFDQIG LAQKIEKHEL VEMRRVAAYI YKKAGRWKQS IALSKKDNMY KDCMETASQS
1301: GDHDLAEQLL VYFIEQGKKE CFATCLFVCY DLIRPDVALE LAWINNMIDF AFPYLLQFIR EYSGKVDELI KDKLEAQKEV KAKEQEEKDV MSQQNMYAQL
1401: LPLALPAPPM PGMGGGPGMG GGYGPPPPMG GMPGMPGMPP MPPYGMPPMG GY

Best Arabidopsis Sequence Match ( AT3G11130.1 )
(BLAST)

0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY

Arabidopsis Description

CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.