Factsheet for Bra028535.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001391.1-P
Bra002306.1-P
Bra008294.1-P
Bra012733.1-P
Bra020106.1-P
Bra025661.1-P
Bra033545.1-P
Bra034166.1-P
Bra034864.1-P
Bra040987.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52850.1	Bra008294.1-P	AT1G77140.1	10888666
AT3G52850.1	Bra001391.1-P	AT3G11130.1	16905657
AT3G52850.1	Bra034166.1-P	AT3G11130.1	16905657
AT3G52850.1	Bra034864.1-P	AT3G11130.1	16905657
AT3G52850.1	Bra012733.1-P	AT4G16190.1	23738689
AT3G52850.1	Bra033545.1-P	AT4G16190.1	23738689
AT3G52850.1	Bra002306.1-P	AT5G20500.1	23738689
AT3G52850.1	Bra020106.1-P	AT5G20500.1	23738689
AT3G52850.1	Bra025661.1-P	AT5G39510.1	10397763
AT3G52850.1	Bra040987.1-P	AT5G39510.1	10397763

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67539	Canola	plasma membrane	99.68	99.68
AT3G52850.1	Thale cress	extracellular, golgi, plasma membrane	93.28	93.58
Bra006952.1-P	Field mustard	plasma membrane	94.24	92.18
Bra005096.1-P	Field mustard	plasma membrane	80.64	81.29
VIT_08s0058g01360.t01	Wine grape	plasma membrane	76.0	76.12
Bra028917.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	62.56	70.83
Bra039817.1-P	Field mustard	extracellular, golgi, plasma membrane	69.92	70.03
Bra013121.1-P	Field mustard	extracellular, plasma membrane, vacuole	70.4	69.73
Bra013445.1-P	Field mustard	plasma membrane	58.56	58.0
Bra039875.1-P	Field mustard	cytosol	9.44	57.28
Bra023151.1-P	Field mustard	plasma membrane	57.6	57.23
Bra039877.1-P	Field mustard	cytosol	30.08	56.97
Bra039898.1-P	Field mustard	cytosol	34.24	55.87
Bra021940.1-P	Field mustard	plasma membrane	54.88	54.7
Bra009645.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plastid	14.4	50.56

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	EnsemblPlantsGene:Bra028535	EnsemblPlants:Bra028535.1	EnsemblPlants:Bra028535.1-P
InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	UniProt:M4EIC0	InterPro:PA_domain	PFAM:PF02225	ScanProsite:PS01187
PANTHER:PTHR22765	PANTHER:PTHR22765:SF54	SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000254345A	SEG:seg	:	:	:	:

Description

AT3G52850 (E=0.0) VSR1, BP-80, ATELP, VSR-1, BP80, BP80B, ATELP1, ATVSR1 | VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1); amino-terminal vacuolar sorting propeptide binding

Coordinates

chrA02:+:933663..937659

Molecular Weight (calculated)

69502.7 Da

IEP (calculated)

6.251

GRAVY (calculated)

-0.407

Length

625 amino acids

Sequence
(BLAST)

001: MNQEKLGFFT LSFLLILSPA LCRFVVEKNN LKVTSPDSIK GIYECAIGNF GVPQYGGTLV GTVAYPRSNQ KACKSYNDFD ISFKSKPGGL PTFVLIDRGD
101: CFFTLKAWIA QQAGAAAILV ADNKAEPLIT MDTPEEDKSD ADYLQNITIP SALITKSLGD SIKSALSGGD MVNMKLDWTE SVPHPDERVE YELWTNSNDQ
201: CGKKCDTQIE FLKNFKGAAQ ILEKGGHTQF TPHYITWYCP EAFTLSKQCK SQCINHGRYC APDPEQDFTK GYDGKDVVVQ NLRQACVYRV MNETGKPWVW
301: WDYVTDFAIR CPMKDKKYTK ECADEIIKSL DIDLKKVDKC IGDPDADVEN PVLKAEQESQ IGKGSRGDVT ILPTLVVNNR QYRGKLEKGA VLKAMCSGFE
401: ESTEPAICLT EDLNTNECLE NNGGCWQDKA ANITACRDTF RGRLCECPTV QGVKFSGDGY THCKASGALH CGINNGGCWR ETRGSYTYSA CVDDHSNGCK
501: CPLGFKGDGV KSCEDVDECK EKKVCQCPEC KCKNTWGSYE CSCKNGLLYM REHDTCIGSN KVGTTKLSWS FLWFLIIAVG VAGLSGYAAY KYRIRRYMDA
601: EIRGIMAQYM PLESQPNPRG PHMDI

Best Arabidopsis Sequence Match ( AT3G52850.1 )
(BLAST)

001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI

Arabidopsis Description

VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [plasma membrane,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.