Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY02347 | Canola | plasma membrane | 99.68 | 99.68 |
CDY43178 | Canola | plasma membrane | 99.36 | 99.36 |
AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 94.12 | 93.82 |
Bra039877.1-P | Field mustard | cytosol | 43.72 | 83.33 |
Bra021940.1-P | Field mustard | plasma membrane | 72.34 | 72.57 |
Bra013445.1-P | Field mustard | plasma membrane | 67.89 | 67.67 |
GSMUA_Achr3P23680_001 | Banana | plasma membrane | 58.19 | 65.01 |
Os06t0664300-01 | Rice | plasma membrane | 65.18 | 64.36 |
GSMUA_AchrUn_... | Banana | plasma membrane | 59.78 | 63.95 |
Zm00001d046945_P001 | Maize | plasma membrane | 63.59 | 63.59 |
TraesCS7D01G471300.1 | Wheat | golgi | 62.16 | 62.06 |
TraesCS7B01G387100.1 | Wheat | extracellular, plasma membrane | 62.16 | 62.06 |
TraesCS7A01G483700.1 | Wheat | golgi, plasma membrane | 61.69 | 61.88 |
TraesCS7A01G281400.1 | Wheat | cytosol, nucleus, plastid | 9.7 | 61.62 |
Bra039817.1-P | Field mustard | extracellular, golgi, plasma membrane | 60.1 | 60.58 |
Os04t0611400-01 | Rice | plasma membrane | 60.73 | 60.44 |
Bra013121.1-P | Field mustard | extracellular, plasma membrane, vacuole | 59.78 | 59.59 |
HORVU7Hr1G109180.2 | Barley | mitochondrion, plasma membrane, vacuole | 62.0 | 59.45 |
TraesCS7D01G145700.2 | Wheat | cytosol | 28.3 | 59.33 |
KXG27024 | Sorghum | plasma membrane | 56.92 | 58.5 |
TraesCS2B01G446100.1 | Wheat | plasma membrane | 59.46 | 58.26 |
TraesCS2A01G425800.2 | Wheat | mitochondrion | 59.3 | 58.19 |
TraesCS2D01G423700.1 | Wheat | golgi | 58.98 | 57.88 |
Bra028535.1-P | Field mustard | plasma membrane | 57.23 | 57.6 |
Bra005096.1-P | Field mustard | plasma membrane | 56.76 | 57.58 |
Bra039875.1-P | Field mustard | cytosol | 9.38 | 57.28 |
Bra028917.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 49.92 | 56.88 |
Bra006952.1-P | Field mustard | plasma membrane | 57.71 | 56.81 |
KXG20551 | Sorghum | plasma membrane, plastid | 64.23 | 53.65 |
Bra009645.1-P | Field mustard | cytosol, mitochondrion, peroxisome, plastid | 12.72 | 44.94 |
TraesCS6A01G310600.1 | Wheat | cytosol | 26.55 | 44.06 |
Bra039898.1-P | Field mustard | cytosol | 26.23 | 43.08 |
TraesCS7A01G436000.1 | Wheat | mitochondrion | 14.15 | 42.18 |
GSMUA_Achr7P03630_001 | Banana | plasma membrane | 57.55 | 35.77 |
HORVU2Hr1G099640.3 | Barley | extracellular | 17.33 | 16.95 |
Protein Annotations
Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.50.30.30 | EnsemblPlantsGene:Bra023151 | EnsemblPlants:Bra023151.1 | EnsemblPlants:Bra023151.1-P |
InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 |
GO:GO:0016020 | GO:GO:0016021 | UniProt:M4E300 | InterPro:PA_domain | PFAM:PF02225 | ScanProsite:PS01187 |
PANTHER:PTHR22765 | PANTHER:PTHR22765:SF56 | SMART:SM00179 | SUPFAM:SSF52025 | SignalP:SignalP-TM | TMHMM:TMhelix |
UniParc:UPI000254246B | : | : | : | : | : |
Description
AT1G30900 (E=0.0) | vacuolar sorting receptor, putative
Coordinates
chrA09:-:21220690..21224007
Molecular Weight (calculated)
69555.6 Da
IEP (calculated)
5.041
GRAVY (calculated)
-0.324
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLINKGATL ALFLALTMVV NGVFGRFIVE KSSVTILSPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAFGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ KSGAAAVLIA DNVDESLITM DSPEESKEAD DFIEKLTIPS ALIDLSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHRVG KEINKSWVWW
301: DYVTDFHIRC SMKEKKYTKE CAESVVESLG LPLDKIKKCM GDPAADVENE VLKGEQALQV GQGDRGDVTI LPTLIINNAQ YRGKLESSSV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWQDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SLNQGGCWSE TKKGLTFSAC SNTETSGCRC
501: PSGFKGDGLK CEDIDECKEK SACQCDGCKC NNKWGSFECK CSGNRLYMKE QDTCIEKSGS GIGWFFTFVI LAAVGGICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTSDPMTGES QQLRLTSAA
101: YFALKVWNGQ KSGAAAVLIA DNVDESLITM DSPEESKEAD DFIEKLTIPS ALIDLSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHRVG KEINKSWVWW
301: DYVTDFHIRC SMKEKKYTKE CAESVVESLG LPLDKIKKCM GDPAADVENE VLKGEQALQV GQGDRGDVTI LPTLIINNAQ YRGKLESSSV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWQDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SLNQGGCWSE TKKGLTFSAC SNTETSGCRC
501: PSGFKGDGLK CEDIDECKEK SACQCDGCKC NNKWGSFECK CSGNRLYMKE QDTCIEKSGS GIGWFFTFVI LAAVGGICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTSDPMTGES QQLRLTSAA
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
Arabidopsis Description
VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.