Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34940.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT2G34940.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT2G34940.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G436000.1 | Wheat | mitochondrion | 48.02 | 86.26 |
| TraesCS7A01G281400.1 | Wheat | cytosol, nucleus, plastid | 21.9 | 83.84 |
| TraesCS7D01G145700.2 | Wheat | cytosol | 43.8 | 55.33 |
| TraesCS7A01G483700.1 | Wheat | golgi, plasma membrane | 61.74 | 37.32 |
| TraesCS7B01G387100.1 | Wheat | extracellular, plasma membrane | 61.21 | 36.83 |
| HORVU7Hr1G109180.2 | Barley | mitochondrion, plasma membrane, vacuole | 62.8 | 36.28 |
| Zm00001d046945_P001 | Maize | plasma membrane | 56.73 | 34.18 |
| Os06t0664300-01 | Rice | plasma membrane | 56.46 | 33.59 |
| CDY12449 | Canola | cytosol | 25.59 | 33.45 |
| TraesCS2A01G425800.2 | Wheat | mitochondrion | 49.08 | 29.02 |
| KRH37180 | Soybean | plasma membrane | 47.76 | 29.01 |
| KRH12166 | Soybean | plasma membrane | 48.02 | 28.98 |
| KXG20551 | Sorghum | plasma membrane, plastid | 56.2 | 28.29 |
| PGSC0003DMT400018916 | Potato | plasma membrane | 46.44 | 28.16 |
| VIT_01s0011g01050.t01 | Wine grape | extracellular, plasma membrane, vacuole | 46.7 | 28.1 |
| CDY50060 | Canola | plasma membrane | 46.44 | 27.98 |
| Solyc02g081970.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 46.44 | 27.59 |
| Bra013445.1-P | Field mustard | plasma membrane | 45.91 | 27.58 |
| CDX78975 | Canola | plasma membrane | 45.91 | 27.58 |
| AT4G20110.2 | Thale cress | plasma membrane | 45.12 | 27.23 |
| AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 45.12 | 27.1 |
| CDY43178 | Canola | plasma membrane | 44.06 | 26.55 |
| Bra023151.1-P | Field mustard | plasma membrane | 44.06 | 26.55 |
| CDY02347 | Canola | plasma membrane | 44.06 | 26.55 |
| Bra039877.1-P | Field mustard | cytosol | 22.96 | 26.36 |
| TraesCS1A01G134600.2 | Wheat | extracellular, plasma membrane, vacuole | 43.8 | 26.02 |
| Bra021940.1-P | Field mustard | plasma membrane | 43.01 | 26.0 |
| CDY43647 | Canola | plasma membrane | 42.74 | 25.8 |
| CDY64650 | Canola | plasma membrane | 42.74 | 25.8 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 39.84 | 25.68 |
| TraesCS4A01G193900.1 | Wheat | extracellular | 42.22 | 25.56 |
| TraesCS5A01G146800.2 | Wheat | golgi | 42.48 | 25.35 |
| AT2G34940.1 | Thale cress | plasma membrane | 41.16 | 25.24 |
| TraesCS5A01G050400.2 | Wheat | extracellular, plasma membrane | 32.72 | 24.6 |
| TraesCS2A01G105500.1 | Wheat | golgi | 41.16 | 24.38 |
| TraesCS5A01G050500.1 | Wheat | extracellular, mitochondrion | 32.45 | 23.88 |
| TraesCS4A01G135100.3 | Wheat | plasma membrane | 40.63 | 23.12 |
| GSMUA_Achr7P03630_001 | Banana | plasma membrane | 39.31 | 14.72 |
| TraesCS4A01G252300.1 | Wheat | extracellular, mitochondrion | 3.96 | 10.34 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G310600.1 | EnsemblPlantsGene:TraesCS6A01G310600 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF56 | SEG:seg | MapMan:22.5.2.1 |
Description
No Description!
Coordinates
chr6A:-:546619734..546621715
Molecular Weight (calculated)
42448.0 Da
IEP (calculated)
8.005
GRAVY (calculated)
-0.462
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPLHVVQLM QPSGSKPTFG TPLLVEEAFS GTCHGKSLRR CGWACKYYAP DPEEDFGEGY EGKQVVVENL RQLCVHWVAN ESGRPWAWWD FTMDYKLRCS
101: MKEKKYNKAC AKEVVASLGL SLEKVLVCMG DPDADADNAV MSKEQEDQIG RGSRGDVTIL PMLVINGVQC RGKLERTAVL KAVCAGFKEG TEPQVCLSHD
201: METNECLHRN GGCWRDEATN MMVCRDTYRG RVCECPMVNG VRYDGDGYTH CKGRLHRHTK FIGHSCGRTK FQLYCNPSRS IVAKDGAPQL FDVMPKEQTM
301: SLTFFERPTY HLAAAALEWL HLQMGDISTC SWEKSRPAPG RACHCHLGPP PTAGAAVPRP FNYATSAVQY ILEKKKKQH
101: MKEKKYNKAC AKEVVASLGL SLEKVLVCMG DPDADADNAV MSKEQEDQIG RGSRGDVTIL PMLVINGVQC RGKLERTAVL KAVCAGFKEG TEPQVCLSHD
201: METNECLHRN GGCWRDEATN MMVCRDTYRG RVCECPMVNG VRYDGDGYTH CKGRLHRHTK FIGHSCGRTK FQLYCNPSRS IVAKDGAPQL FDVMPKEQTM
301: SLTFFERPTY HLAAAALEWL HLQMGDISTC SWEKSRPAPG RACHCHLGPP PTAGAAVPRP FNYATSAVQY ILEKKKKQH
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
Arabidopsis Description
VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.