Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 6
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0596900-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34940.1 | Os03t0596900-01 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046945_P001 | Maize | plasma membrane | 85.24 | 86.33 |
| TraesCS7B01G387100.1 | Wheat | extracellular, plasma membrane | 82.42 | 83.33 |
| TraesCS7D01G471300.1 | Wheat | golgi | 81.79 | 82.7 |
| TraesCS7A01G483700.1 | Wheat | golgi, plasma membrane | 81.16 | 82.46 |
| HORVU7Hr1G109180.2 | Barley | mitochondrion, plasma membrane, vacuole | 81.0 | 78.66 |
| TraesCS7A01G281400.1 | Wheat | cytosol, nucleus, plastid | 12.09 | 77.78 |
| TraesCS7D01G145700.2 | Wheat | cytosol | 35.79 | 76.0 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 67.5 | 73.13 |
| KXG20551 | Sorghum | plasma membrane, plastid | 85.4 | 72.24 |
| VIT_01s0011g01050.t01 | Wine grape | extracellular, plasma membrane, vacuole | 67.66 | 68.41 |
| KRH37180 | Soybean | plasma membrane | 66.88 | 68.27 |
| PGSC0003DMT400018916 | Potato | plasma membrane | 66.72 | 68.0 |
| KRH12166 | Soybean | plasma membrane | 67.03 | 67.99 |
| Os04t0611400-01 | Rice | plasma membrane | 66.25 | 66.77 |
| Solyc02g081970.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 66.88 | 66.77 |
| Bra023151.1-P | Field mustard | plasma membrane | 64.36 | 65.18 |
| CDY02347 | Canola | plasma membrane | 64.36 | 65.18 |
| CDY43178 | Canola | plasma membrane | 64.21 | 65.02 |
| AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 64.36 | 64.98 |
| CDY50060 | Canola | plasma membrane | 63.27 | 64.07 |
| CDX78975 | Canola | plasma membrane | 63.11 | 63.71 |
| Bra013445.1-P | Field mustard | plasma membrane | 62.95 | 63.55 |
| AT4G20110.2 | Thale cress | plasma membrane | 62.64 | 63.53 |
| Os07t0680000-01 | Rice | plasma membrane | 59.5 | 60.54 |
| AT2G34940.1 | Thale cress | plasma membrane | 58.71 | 60.52 |
| Os03t0335300-01 | Rice | plasma membrane | 59.18 | 60.03 |
| Bra039877.1-P | Field mustard | cytosol | 31.08 | 60.0 |
| CDY12449 | Canola | cytosol | 27.32 | 60.0 |
| Os10t0346600-00 | Rice | plasma membrane | 58.71 | 59.27 |
| Os11t0116550-01 | Rice | extracellular, plasma membrane, vacuole | 58.24 | 59.27 |
| Bra021940.1-P | Field mustard | plasma membrane | 57.93 | 58.85 |
| CDY64650 | Canola | plasma membrane | 57.61 | 58.44 |
| CDY43647 | Canola | plasma membrane | 57.3 | 58.12 |
| TraesCS6A01G310600.1 | Wheat | cytosol | 33.59 | 56.46 |
| Os12t0116000-01 | Rice | plastid | 57.61 | 50.41 |
| TraesCS7A01G436000.1 | Wheat | mitochondrion | 16.48 | 49.76 |
| GSMUA_Achr7P03630_001 | Banana | plasma membrane | 63.11 | 39.72 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.50.30.30 | EntrezGene:4341771 | ProteinID:BAD45379.1 | ProteinID:BAF20212.1 |
| ProteinID:BAS99021.1 | InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:Os06g0664300 | EnsemblPlants:Os06t0664300-01 | InterPro:PA_domain |
| PFAM:PF02225 | ScanProsite:PS01187 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF56 | UniProt:Q655Y8 | SMART:SM00179 |
| SUPFAM:SSF52025 | TMHMM:TMhelix | UniParc:UPI000043A28D | RefSeq:XP_015642868.1 | SEG:seg | : |
Description
Similar to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d). (Os06t0664300-01)
Coordinates
chr6:+:27433420..27440995
Molecular Weight (calculated)
70669.8 Da
IEP (calculated)
5.456
GRAVY (calculated)
-0.361
Length
637 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRAPWLAG IGAVPFLIVV VVAVVGAAVP AMGRFVVEKS SVRVLSPEHI RGHHDAAIGN FGVPDYGGTL TGVVVYPDKK ATGCAEFDAK FKSKSRRPVI
101: LLLDRGECYF ALKAWNAQQA GAAAVLIADN VDEQLLTMDT PEESPETEYI DRISIPSALV NRAFGESLKR MSSPSPSSEA AVEVVVKLDW RESMPHPDER
201: VEYELWTNSN DECGARCDEQ MEFVRGFRGH AQIMERGGYA LFTPHYITWY CPEAFKLTQQ CKSQCINHGR YCAPDPEQDF GEGYEGKDVV VENLRQLCVH
301: RVANETGRPW AWWDYVMDYK IRCSMKEKKY SKGCAEDVVK ALGLSLDKVL ECMGDPEADT DNAVLAKEQE DQIGRGSRGD VTILPTLVIN NVQYRGKLER
401: TAVLKAVCAG FKEGTEPRVC LSNDIETNEC LHRNGGCWRD EKTNVTACKD TFRGRVCECP VVNGVQYEGD GYIGCKAVGP GRCTVDNGGC WSETRGHQTF
501: SACSDTALTG CRCPPGFQGD GHKCEDLDEC KEKLACTCPN CHCKNTWGNY ECKCKGNQIY IRGEDTCIAN SMSRFGWFIT ILVASCVAGV GIAGYVFYKY
601: RLRSYMDSEI MAIMSQYMPL DSQNNENQPL RQHDSEA
101: LLLDRGECYF ALKAWNAQQA GAAAVLIADN VDEQLLTMDT PEESPETEYI DRISIPSALV NRAFGESLKR MSSPSPSSEA AVEVVVKLDW RESMPHPDER
201: VEYELWTNSN DECGARCDEQ MEFVRGFRGH AQIMERGGYA LFTPHYITWY CPEAFKLTQQ CKSQCINHGR YCAPDPEQDF GEGYEGKDVV VENLRQLCVH
301: RVANETGRPW AWWDYVMDYK IRCSMKEKKY SKGCAEDVVK ALGLSLDKVL ECMGDPEADT DNAVLAKEQE DQIGRGSRGD VTILPTLVIN NVQYRGKLER
401: TAVLKAVCAG FKEGTEPRVC LSNDIETNEC LHRNGGCWRD EKTNVTACKD TFRGRVCECP VVNGVQYEGD GYIGCKAVGP GRCTVDNGGC WSETRGHQTF
501: SACSDTALTG CRCPPGFQGD GHKCEDLDEC KEKLACTCPN CHCKNTWGNY ECKCKGNQIY IRGEDTCIAN SMSRFGWFIT ILVASCVAGV GIAGYVFYKY
601: RLRSYMDSEI MAIMSQYMPL DSQNNENQPL RQHDSEA
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
Arabidopsis Description
VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.