Factsheet for Bra021940.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010432.1-P
Bra026415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34940.1	Bra010432.1-P	AT4G26630.1	25387881
AT2G34940.1	Bra026415.1-P	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43647	Canola	plasma membrane	97.61	97.45
CDY64650	Canola	plasma membrane	96.97	96.82
AT2G34940.1	Thale cress	plasma membrane	80.22	81.39
Bra023151.1-P	Field mustard	plasma membrane	72.57	72.34
Bra039877.1-P	Field mustard	cytosol	37.96	72.12
Bra013445.1-P	Field mustard	plasma membrane	61.24	60.86
TraesCS7A01G281400.1	Wheat	cytosol, nucleus, plastid	9.41	59.6
GSMUA_AchrUn_...	Banana	plasma membrane	54.55	58.16
Os06t0664300-01	Rice	plasma membrane	58.85	57.93
GSMUA_Achr3P23680_001	Banana	plasma membrane	51.99	57.9
Zm00001d046945_P001	Maize	plasma membrane	57.42	57.23
TraesCS7D01G145700.2	Wheat	cytosol	26.95	56.33
Bra039817.1-P	Field mustard	extracellular, golgi, plasma membrane	55.5	55.77
TraesCS7D01G471300.1	Wheat	golgi	55.82	55.56
TraesCS7A01G483700.1	Wheat	golgi, plasma membrane	55.5	55.5
Bra039875.1-P	Field mustard	cytosol	9.09	55.34
TraesCS7B01G387100.1	Wheat	extracellular, plasma membrane	55.5	55.24
Bra013121.1-P	Field mustard	extracellular, plasma membrane, vacuole	55.5	55.15
Bra028535.1-P	Field mustard	plasma membrane	54.7	54.88
Bra005096.1-P	Field mustard	plasma membrane	53.91	54.52
Os04t0611400-01	Rice	plasma membrane	54.23	53.8
TraesCS2A01G425800.2	Wheat	mitochondrion	54.86	53.67
Bra006952.1-P	Field mustard	plasma membrane	54.39	53.36
TraesCS2B01G446100.1	Wheat	plasma membrane	54.55	53.27
KXG27024	Sorghum	plasma membrane	51.99	53.27
HORVU7Hr1G109180.2	Barley	mitochondrion, plasma membrane, vacuole	55.5	53.05
TraesCS2D01G423700.1	Wheat	golgi	54.07	52.89
Bra028917.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	46.25	52.54
KXG20551	Sorghum	plasma membrane, plastid	57.74	48.07
TraesCS6A01G310600.1	Wheat	cytosol	26.0	43.01
TraesCS7A01G436000.1	Wheat	mitochondrion	14.04	41.71
Bra009645.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plastid	11.8	41.57
Bra039898.1-P	Field mustard	cytosol	23.92	39.16
GSMUA_Achr7P03630_001	Banana	plasma membrane	53.27	33.0
HORVU2Hr1G099640.3	Barley	extracellular	16.59	16.17

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	EnsemblPlantsGene:Bra021940	EnsemblPlants:Bra021940.1	EnsemblPlants:Bra021940.1-P
InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	UniProt:M4DZJ3	InterPro:PA_domain	PFAM:PF02225	ScanProsite:PS01187
PANTHER:PTHR22765	PANTHER:PTHR22765:SF56	SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0002543AA4	SEG:seg	:	:	:	:

Description

AT2G34940 (E=8e-303) | vacuolar sorting receptor, putative

Coordinates

chrA04:+:15299078..15302130

Molecular Weight (calculated)

70352.6 Da

IEP (calculated)

5.339

GRAVY (calculated)

-0.321

Length

627 amino acids

Sequence
(BLAST)

001: MYPRNKETVL TLFLALTMVV NVVSTRFFVE KNSVTVLNSW EMKAKHDAAI ANFGIPSHGG FMIGSVVHAG QGAYGCDPLN ETFKPKSPYP TILIIDRGVC
101: NYALKIWNGQ QAGAAAVLLA DNIVEPLIAM DSPEESQHED PDLIEKIKIP SALILHSFGG SLKKALNKGE EIVLKIDWSE TIPNPDERVE YELWANTNDE
201: CGVHCNEQMS FIKNFKGTAQ ILEKGGHALF TPHYISWFCP QELRLSSQCK SQCINHGRYC APDPELDYED GYNGKDVVYE NLRQLCVHKV AKEKNSSWVW
301: WDYVTDFNIR CSMKEKRYSK ECAETVVESL GLSLEKIKKC IGDIDADVEN EVLKAEQAYQ LGQEKRGVVT IFPTLIINNS QYRGKLERTS VLKAICSGYK
401: EGTEPLICLS TDIETDECLV ANGGCWQDKI SNITACKDTF RGRVCECPVV NGVQYKGDGY TSCKPYGPAR CSMNEGGCWS ETRNGLNFSA CLNSETSGCR
501: CPLGFHGDGL KCEDIDECKE KSACQCDECK CKNNWGGYEC KCSNNSLYLK EQDTCIERIS RSRSRWFFII VVITAIAGIS LSSYIFYKYH IQAYMDSEIV
601: SVMSQYIPLD SRNIHQDSNQ IENCNLL

Best Arabidopsis Sequence Match ( AT2G34940.1 )
(BLAST)

001: MSPSNKGTVL ALILALTMVV VNGFSSRFFV EKSSLTVLNS WEMGAKHDAA IANFGLPKYG GFMIGSVVYA GQDAYGCNSF NKTFNTKSPY PKILLIDRGV
101: CNFALKIWNG QQSGAAAVLL ADNIVEPLIT MDTPQDEDPD FIDKVKIPSA LILRSFGDSL KKALKRGEEV ILKMDWSESI PNPDERVEYE LWANTNDECG
201: VHCDKQIDFI KNFKGMAQIL EKGGYTLFRP HYISWVCPKE LLLSKQCRTQ CINQGRYCAL DTKQEFEDGY NGKDVVYENL RQLCVHKVAK EKNTSWVWWD
301: YVTDFNIRCS MKEKKYSREC AETIVESLGL SLEKIKKCIG DPDADVENEV LKAEEAFQLG QENRGIVTIF PTLMINNAQY RGKLERTAVL KAICSGFKER
401: TEPSICLNSD IETNECLIEN GGCWQDKRSN VTACKDTFRG RVCECPVVDG VQYKGDGYTS CKPYGPARCS MNNGDCWSET RKGLTFSSCS DSETSGCRCP
501: LGFLGDGLKC EDIDECKEKS ACKCDGCKCK NNWGGYECKC SNNSIYMKEE DTCIERRSGS RSRGLFTIVV LTAIAGISLG AYIFYKYHLQ SYMDSEIVSI
601: MSQYIPLDSQ SINQDSFK

Arabidopsis Description

VSR5VSR5 [Source:UniProtKB/TrEMBL;Acc:A0A178VYD0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.