Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plasma membrane: 27341663 |
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013757_P010 | |
| Zm00001d033159_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34940.1 | Zm00001d013757_P010 | AT4G26630.1 | 25387881 |
| AT2G34940.1 | Zm00001d033159_P001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0664300-01 | Rice | plasma membrane | 86.33 | 85.24 |
| TraesCS7B01G387100.1 | Wheat | extracellular, plasma membrane | 82.35 | 82.22 |
| TraesCS7D01G471300.1 | Wheat | golgi | 81.88 | 81.75 |
| TraesCS7A01G483700.1 | Wheat | golgi, plasma membrane | 81.24 | 81.5 |
| TraesCS7A01G281400.1 | Wheat | cytosol, nucleus, plastid | 12.72 | 80.81 |
| KXG20551 | Sorghum | plasma membrane, plastid | 94.59 | 79.02 |
| HORVU7Hr1G109180.2 | Barley | mitochondrion, plasma membrane, vacuole | 81.4 | 78.05 |
| TraesCS7D01G145700.2 | Wheat | cytosol | 35.93 | 75.33 |
| Zm00001d012390_P001 | Maize | cytosol | 10.33 | 72.22 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 65.18 | 69.73 |
| Zm00001d004678_P001 | Maize | cytosol, nucleus, plastid | 10.97 | 68.32 |
| KRH12166 | Soybean | plasma membrane | 65.98 | 66.08 |
| KRH37180 | Soybean | plasma membrane | 65.34 | 65.87 |
| VIT_01s0011g01050.t01 | Wine grape | extracellular, plasma membrane, vacuole | 65.5 | 65.4 |
| PGSC0003DMT400018916 | Potato | plasma membrane | 64.86 | 65.28 |
| Solyc02g081970.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 65.02 | 64.11 |
| Bra023151.1-P | Field mustard | plasma membrane | 63.59 | 63.59 |
| CDY02347 | Canola | plasma membrane | 63.59 | 63.59 |
| CDY43178 | Canola | plasma membrane | 63.43 | 63.43 |
| AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 62.96 | 62.76 |
| CDY50060 | Canola | plasma membrane | 61.84 | 61.84 |
| CDX78975 | Canola | plasma membrane | 62.0 | 61.81 |
| AT4G20110.2 | Thale cress | plasma membrane | 61.53 | 61.62 |
| Bra013445.1-P | Field mustard | plasma membrane | 61.69 | 61.49 |
| Zm00001d022439_P001 | Maize | extracellular, plasma membrane, vacuole | 60.41 | 60.03 |
| Bra039877.1-P | Field mustard | cytosol | 31.16 | 59.39 |
| Zm00001d052354_P005 | Maize | plasma membrane | 58.82 | 59.39 |
| Zm00001d005062_P003 | Maize | plasma membrane | 58.51 | 58.97 |
| Zm00001d014302_P003 | Maize | plasma membrane | 57.39 | 58.41 |
| CDY12449 | Canola | cytosol | 26.55 | 57.59 |
| AT2G34940.1 | Thale cress | plasma membrane | 56.44 | 57.44 |
| Bra021940.1-P | Field mustard | plasma membrane | 57.23 | 57.42 |
| CDY64650 | Canola | plasma membrane | 57.23 | 57.32 |
| Zm00001d029056_P002 | Maize | extracellular, plasma membrane, vacuole | 56.6 | 56.87 |
| CDY43647 | Canola | plasma membrane | 56.76 | 56.85 |
| TraesCS6A01G310600.1 | Wheat | cytosol | 34.18 | 56.73 |
| Zm00001d014303_P002 | Maize | plasma membrane | 54.85 | 55.74 |
| Zm00001d047522_P002 | Maize | extracellular, plasma membrane, vacuole | 56.92 | 54.74 |
| TraesCS7A01G436000.1 | Wheat | mitochondrion | 16.85 | 50.24 |
| GSMUA_Achr7P03630_001 | Banana | plasma membrane | 61.05 | 37.94 |
| Zm00001d053767_P001 | Maize | mitochondrion | 8.11 | 36.43 |
| Zm00001d005060_P001 | Maize | extracellular | 5.72 | 33.03 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.40.30.10 | Gene3D:3.50.30.30 | ProteinID:AQL05228.1 | EMBL:BT063498 |
| UniProt:C0P5C9 | InterPro:EGF_Ca-bd_CS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:PA_domain | PFAM:PF02225 | ScanProsite:PS01187 | PANTHER:PTHR22765 |
| PANTHER:PTHR22765:SF56 | SUPFAM:SSF52025 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001949051 | EnsemblPlantsGene:Zm00001d046945 |
| EnsemblPlants:Zm00001d046945_P001 | EnsemblPlants:Zm00001d046945_T001 | SEG:seg | : | : | : |
Description
Vacuolar sorting receptor 7
Coordinates
chr9:+:112208355..112213865
Molecular Weight (calculated)
69630.6 Da
IEP (calculated)
6.080
GRAVY (calculated)
-0.362
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGRAPWLA AGLVAVLMVV AARARFVVEK SSVRVLAPEH IRGHHDAAIG NFGVPDYGGT LTGVVIYPDT KPTGCDDFDA KFKAKSRRPV ILLLDRGECY
101: FALKAWNAQR AGAAAVLIAD SVDEQLLTMD SPEASPGTEY IDKINIPSAL VNRAFGESLK KMAQKVAGAG SEEVVVKLDW RESMPHPDER VEYELWTNSN
201: DECGARCDEQ MAFVRGFRGH AQLLERAGYA RFTPHYITWY CPEAFRATQQ CRSQCINRGR YCAPDPEGDF GAGYEGKDVV VENLRQLCVH RVANETGRPW
301: AWWDYVMDYK IRCSMKEKKY TKTCAEDVVT ALGLDLKKVL ECMGDPEADA DNAVLSKEQE DQIGSGSRGD VTILPTLVIN NVQYRGKLER TAVLKAVCAG
401: FKEGTEPRVC LSHDIETNEC LHRNGGCWRD EATNVTACQD TYRGRVCECP VVNGVRYEGD GYTDCKAIGP GRCALNNGGC WSATRGHQTF SACTETALTG
501: CRCPPGFHGD GHKCEDLDEC REKLACTCPD CQCKNTWGNY ECKCKGNQLY IRGEDVCIAN SMSKLGWFIT IAAVACVLGV GVAGYVFYKY RLRSYMDSEI
601: MSIMSQYMPL DSQNNENQPL RQHDSEALR
101: FALKAWNAQR AGAAAVLIAD SVDEQLLTMD SPEASPGTEY IDKINIPSAL VNRAFGESLK KMAQKVAGAG SEEVVVKLDW RESMPHPDER VEYELWTNSN
201: DECGARCDEQ MAFVRGFRGH AQLLERAGYA RFTPHYITWY CPEAFRATQQ CRSQCINRGR YCAPDPEGDF GAGYEGKDVV VENLRQLCVH RVANETGRPW
301: AWWDYVMDYK IRCSMKEKKY TKTCAEDVVT ALGLDLKKVL ECMGDPEADA DNAVLSKEQE DQIGSGSRGD VTILPTLVIN NVQYRGKLER TAVLKAVCAG
401: FKEGTEPRVC LSHDIETNEC LHRNGGCWRD EATNVTACQD TYRGRVCECP VVNGVRYEGD GYTDCKAIGP GRCALNNGGC WSATRGHQTF SACTETALTG
501: CRCPPGFHGD GHKCEDLDEC REKLACTCPD CQCKNTWGNY ECKCKGNQLY IRGEDVCIAN SMSKLGWFIT IAAVACVLGV GVAGYVFYKY RLRSYMDSEI
601: MSIMSQYMPL DSQNNENQPL RQHDSEALR
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
Arabidopsis Description
VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.