Factsheet for Zm00001d014303_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016446_P001
Zm00001d046900_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G14720.1	Zm00001d016446_P001	AT4G16190.1	23738689
AT2G14720.1	Zm00001d046900_P003	AT5G20500.1	23738689

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012390_P001	Maize	cytosol	14.05	96.67
Zm00001d014302_P003	Maize	plasma membrane	93.21	93.37
Zm00001d004678_P001	Maize	cytosol, nucleus, plastid	14.7	90.1
Os10t0346600-00	Rice	plasma membrane	84.33	82.73
TraesCS1D01G131100.1	Wheat	golgi	82.88	81.04
TraesCS1B01G148200.1	Wheat	plasma membrane	82.55	80.85
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	82.88	80.41
HORVU1Hr1G032780.9	Barley	extracellular	81.42	79.25
GSMUA_Achr6P16900_001	Banana	cytosol, nucleus, plasma membrane	69.31	75.53
GSMUA_Achr10P...	Banana	cytosol	68.17	74.3
KRG91109	Soybean	endoplasmic reticulum	71.41	70.05
KRH35666	Soybean	endoplasmic reticulum	71.41	70.05
PGSC0003DMT400066159	Potato	endoplasmic reticulum, plasma membrane, vacuole	69.63	68.41
VIT_03s0091g00740.t01	Wine grape	plasma membrane	69.63	68.3
Solyc01g107130.2.1	Tomato	nucleus	69.47	68.25
CDX93144	Canola	extracellular, plasma membrane, vacuole	67.04	68.03
CDX81459	Canola	plasma membrane	68.5	67.95
CDY37219	Canola	extracellular, golgi, plasma membrane	68.34	67.79
AT2G14740.1	Thale cress	extracellular, plasma membrane, vacuole	68.66	67.68
AT2G14720.1	Thale cress	extracellular, plasma membrane, vacuole	68.66	67.68
KRH27575	Soybean	endoplasmic reticulum	68.5	67.52
CDY65441	Canola	plasma membrane	68.66	67.35
Bra013121.1-P	Field mustard	extracellular, plasma membrane, vacuole	68.66	67.35
Bra039817.1-P	Field mustard	extracellular, golgi, plasma membrane	67.85	67.31
KRH77935	Soybean	endoplasmic reticulum	67.85	65.32
Zm00001d052354_P005	Maize	plasma membrane	62.84	62.44
Zm00001d005062_P003	Maize	plasma membrane	62.68	62.18
Zm00001d022439_P001	Maize	extracellular, plasma membrane, vacuole	60.26	58.93
Zm00001d029056_P002	Maize	extracellular, plasma membrane, vacuole	59.13	58.47
Zm00001d047522_P002	Maize	extracellular, plasma membrane, vacuole	59.29	56.12
Zm00001d046945_P001	Maize	plasma membrane	55.74	54.85
Zm00001d005060_P001	Maize	extracellular	7.75	44.04
Zm00001d053767_P001	Maize	mitochondrion	6.79	30.0

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.40.30.10	Gene3D:3.50.30.30	UniProt:A0A1D6GRY0	ProteinID:AQK65822.1
InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:PA_domain	PFAM:PF02225	ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF54
SUPFAM:SSF52025	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0008438717	EnsemblPlantsGene:Zm00001d014303	EnsemblPlants:Zm00001d014303_P002
EnsemblPlants:Zm00001d014303_T002	SEG:seg	:	:	:	:

Description

Vacuolar-sorting receptor 4

Coordinates

chr5:-:40158077..40174072

Molecular Weight (calculated)

68536.1 Da

IEP (calculated)

6.953

GRAVY (calculated)

-0.279

Length

619 amino acids

Sequence
(BLAST)

001: MRRSSHAMGA QAFRLLLLLL LAAAAAEARF VVEKNSLMVT SPTSLRGRHD SAIGNFGIPQ YGGSMAGAVV YPKDNAKACD DFDGRHPFRA KPGAMPTFLL
101: IDRGECLFAK KVWNAQNAGA SAVLVVDDKD EPLITMDLPR EDDEASKYIQ NITIPSALID EKFGDQLKKA VKDGEMVNVN LDWREAVPHP DDRVEYELWT
201: NSNDECGPKC DMLMNFLKEF KGAAQLLEKG GYSQFTPHYI TWYCPQAFVI SKQCKSQCIN HGRYCAPDPE QDFSTGYEGK DVVVENLRQL CVFKVANENK
301: KPWVWWDYVT DFHIRCPMKE KKYNKKCAET VIKSLGLDVK KVDKCMGDPN ADSDHPLLKM EQDAQIGKGS RGDVTILPTL VVNNRQYRGK LERKAVLKAI
401: CAGFEETTEP NVCLSDDIET NECLNDNGGC WQDKSANVTA CRVCVDRTPS VVECVNAPLS MAYNLKAMAT AIVNVIKRFI IVIYVIAAAG PGKCLINHGG
501: CWHETRNGKT FSACQESGDG KCLCPAGFRG DGVKKCEDID ECKEKKACQC PECNCKDTWG GYDCTCSGDL LYIREHDTCI SKTAVQAKAA WAAVWGILIV
601: VAVVAAGSYV VYKYRLRVS

Best Arabidopsis Sequence Match ( AT2G14720.1 )
(BLAST)

001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA

Arabidopsis Description

VSR4Vacuolar-sorting receptor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZQ3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.