Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 6
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35666 | Soybean | endoplasmic reticulum | 97.94 | 97.94 |
| KRH27575 | Soybean | endoplasmic reticulum | 85.42 | 85.83 |
| KRH77935 | Soybean | endoplasmic reticulum | 85.74 | 84.14 |
| VIT_03s0091g00740.t01 | Wine grape | plasma membrane | 83.68 | 83.68 |
| CDY37219 | Canola | extracellular, golgi, plasma membrane | 81.78 | 82.69 |
| CDX81459 | Canola | plasma membrane | 81.62 | 82.53 |
| AT2G14740.1 | Thale cress | extracellular, plasma membrane, vacuole | 81.93 | 82.32 |
| Zm00001d012390_P001 | Maize | cytosol | 11.73 | 82.22 |
| Bra039817.1-P | Field mustard | extracellular, golgi, plasma membrane | 81.3 | 82.21 |
| PGSC0003DMT400066159 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 81.46 | 81.59 |
| AT2G14720.1 | Thale cress | extracellular, plasma membrane, vacuole | 80.98 | 81.37 |
| CDX93144 | Canola | extracellular, plasma membrane, vacuole | 78.61 | 81.31 |
| CDY65441 | Canola | plasma membrane | 81.14 | 81.14 |
| Bra013121.1-P | Field mustard | extracellular, plasma membrane, vacuole | 81.14 | 81.14 |
| Solyc01g107130.2.1 | Tomato | nucleus | 80.98 | 81.11 |
| GSMUA_Achr6P16900_001 | Banana | cytosol, nucleus, plasma membrane | 70.52 | 78.35 |
| Zm00001d004678_P001 | Maize | cytosol, nucleus, plastid | 12.52 | 78.22 |
| GSMUA_Achr10P... | Banana | cytosol | 68.46 | 76.06 |
| Os10t0346600-00 | Rice | plasma membrane | 75.28 | 75.28 |
| Zm00001d014302_P003 | Maize | plasma membrane | 72.9 | 74.43 |
| TraesCS1D01G131100.1 | Wheat | golgi | 74.64 | 74.41 |
| TraesCS1B01G148200.1 | Wheat | plasma membrane | 73.69 | 73.58 |
| TraesCS1A01G134600.2 | Wheat | extracellular, plasma membrane, vacuole | 74.33 | 73.51 |
| Zm00001d014303_P002 | Maize | plasma membrane | 70.05 | 71.41 |
| HORVU1Hr1G032780.9 | Barley | extracellular | 70.05 | 69.5 |
| KRH00437 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 66.09 | 67.37 |
| KRH40723 | Soybean | extracellular, golgi, plasma membrane | 65.45 | 66.19 |
| KRH37180 | Soybean | plasma membrane | 63.39 | 64.1 |
| KRH48733 | Soybean | extracellular, golgi, plasma membrane | 62.6 | 63.5 |
| KRH12166 | Soybean | plasma membrane | 63.07 | 63.38 |
| KRH64888 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 61.97 | 62.66 |
Protein Annotations
| EntrezGene:100776184 | Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.50.30.30 | EMBL:ACUP02012661 | InterPro:EGF-like_CS |
| InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | EnsemblPlantsGene:GLYMA_20G133800 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | UniProt:I1NG28 | EnsemblPlants:KRG91109 | ProteinID:KRG91109 |
| ProteinID:KRG91109.1 | InterPro:PA_domain | PFAM:PF02225 | PFAM:PF12662 | ScanProsite:PS01186 | ScanProsite:PS01187 |
| PANTHER:PTHR22765 | PANTHER:PTHR22765:SF54 | SMART:SM00179 | SUPFAM:SSF52025 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI000233DCF3 | InterPro:cEGF | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:37375743..37381370
Molecular Weight (calculated)
69830.9 Da
IEP (calculated)
5.270
GRAVY (calculated)
-0.357
Length
631 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLRRSSLCV FLGFLALFLS PPPSMAKFVV EKNSLTVTSP DNIKGTHDSA IGNFGIPQYG GSMAGNVLYP KDNKKGCKEF DEYGISFKSK PGALPTIVLL
101: DRGNCFFALK VWNAQKAGAS AVLVADDIVE KLITMDTPEE DVSSAKYIEN ITIPSALIEK SFGEKLKDAI SNGDMVNVNL DWREAVPHPD DRVEYELWTN
201: SNDECGVKCD MLMEFVKDFK GAAQILEKGG YTQFTPHYIT WYCPQAFTMS KQCKSQCINH GRYCAPDPEQ DFSTGYDGKD VVIENLRQLC VFKVANETKK
301: PWVWWDYVTD FQIRCPMKEK KYNKKCADAV IESLGLDIKK IERCMGDPNA DSENPVLKEE QDAQVGKGSR GDVTILPTLV VNNRQYRGKL EKGAVMKAIC
401: AGFEETTEPA VCLSSDVETN ECLENNGGCW QDKVANITAC KDTFRGRVCE CPLVDGVQFK GDGYTICAAS GPGRCKINNG GCWHEARNGH AYSACSDDGG
501: VKCQCPAGFK GDGVKNCEDI DECKEKKACQ CPECSCKNTW GSYDCTCSGD LLYIRDHDTC ISKTASQEGR SAWAAFWVIL VGLVVAAAGA YLVYKYRIRS
601: YMDSEIRAIM AQYMPLDSQG EVVNHVHEER A
101: DRGNCFFALK VWNAQKAGAS AVLVADDIVE KLITMDTPEE DVSSAKYIEN ITIPSALIEK SFGEKLKDAI SNGDMVNVNL DWREAVPHPD DRVEYELWTN
201: SNDECGVKCD MLMEFVKDFK GAAQILEKGG YTQFTPHYIT WYCPQAFTMS KQCKSQCINH GRYCAPDPEQ DFSTGYDGKD VVIENLRQLC VFKVANETKK
301: PWVWWDYVTD FQIRCPMKEK KYNKKCADAV IESLGLDIKK IERCMGDPNA DSENPVLKEE QDAQVGKGSR GDVTILPTLV VNNRQYRGKL EKGAVMKAIC
401: AGFEETTEPA VCLSSDVETN ECLENNGGCW QDKVANITAC KDTFRGRVCE CPLVDGVQFK GDGYTICAAS GPGRCKINNG GCWHEARNGH AYSACSDDGG
501: VKCQCPAGFK GDGVKNCEDI DECKEKKACQ CPECSCKNTW GSYDCTCSGD LLYIRDHDTC ISKTASQEGR SAWAAFWVIL VGLVVAAAGA YLVYKYRIRS
601: YMDSEIRAIM AQYMPLDSQG EVVNHVHEER A
001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
Arabidopsis Description
VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.