CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12368	Soybean	endoplasmic reticulum	92.48	91.79
HORVU7Hr1G009480.1	Barley	cytosol	25.56	77.27
HORVU7Hr1G110720.1	Barley	cytosol	45.86	73.49
Os06t0659500-01	Rice	cytosol, plasma membrane	40.6	70.13
HORVU3Hr1G028600.1	Barley	cytosol	31.58	66.67
CDX92459	Canola	endoplasmic reticulum, golgi	63.16	64.62
Bra002306.1-P	Field mustard	golgi	62.41	62.88
GSMUA_Achr7P04990_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.4	62.7
VIT_11s0052g00500.t01	Wine grape	endoplasmic reticulum, extracellular	63.91	62.5
Bra020106.1-P	Field mustard	endoplasmic reticulum	62.41	62.41
AT5G20500.1	Thale cress	endoplasmic reticulum	62.41	61.48
CDY16539	Canola	endoplasmic reticulum	60.9	61.36
EER88767	Sorghum	mitochondrion	59.4	58.52
TraesCS7D01G480900.1	Wheat	mitochondrion, plastid	58.65	57.78
TraesCS7A01G493400.1	Wheat	mitochondrion, plastid	58.65	57.78
HORVU7Hr1G110810.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	59.4	57.66
TraesCS7B01G404000.1	Wheat	mitochondrion, plastid	57.89	57.04
Zm00001d046900_P003	Maize	mitochondrion	57.89	57.04
GSMUA_Achr1P10400_001	Banana	plastid	55.64	56.06
PGSC0003DMT400020793	Potato	endoplasmic reticulum, extracellular	59.4	55.24
Solyc11g069860.1.1	Tomato	plastid	59.4	55.24
KRH28731	Soybean	endoplasmic reticulum, extracellular	46.62	48.06
KRH76731	Soybean	extracellular, golgi	45.86	47.29
GSMUA_Achr1P23530_001	Banana	extracellular	45.86	44.53
CDY45086	Canola	endoplasmic reticulum	55.64	40.22
KRH07180	Soybean	cytosol	29.32	36.45
KRH55649	Soybean	plastid	33.83	27.44
KRH32275	Soybean	plastid	33.83	27.11
KRH19662	Soybean	plastid	31.58	25.3

Protein Annotations

EntrezGene:100777703	MapMan:18.8.2	Gene3D:3.40.30.10	EMBL:ACUP02005442	EMBL:BT095359	UniProt:C6TCR3
InterPro:GLR_AS	EnsemblPlantsGene:GLYMA_09G062300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:Glutaredoxin_euk/vir
InterPro:Glutaredoxin_subgr	InterPro:IPR002109	EnsemblPlants:KRH37371	ProteinID:KRH37371	ProteinID:KRH37371.1	PFAM:PF00462
PRINTS:PR00160	ScanProsite:PS00195	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF116	SUPFAM:SSF52833
SignalP:SignalP-noTM	TIGRFAMs:TIGR02180	InterPro:Thioredoxin-like_sf	UniParc:UPI0001B1628A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:5905288..5907949

Molecular Weight (calculated)

14631.7 Da

IEP (calculated)

7.144

GRAVY (calculated)

-0.024

Length

133 amino acids

Sequence
(BLAST)

001: MVARLAVTAL VLIALATISL QSSASASSVG KFVDETITSH KIVIFSKTYC PYCRRAKAVF KELNQVPHVV ELDEREDGSK IQDIMVNIVG RRTVPQVFIN
101: GKHLGGSDDT VEAYESGHLH KLLGIEKKDH DDL

Best Arabidopsis Sequence Match ( AT5G20500.1 )
(BLAST)

001: MTMFRSISMV MLLVALVTFI SMVSSAASSP EADFVKKTIS SHKIVIFSKS YCPYCKKAKS VFRELDQVPY VVELDEREDG WSIQTALGEI VGRRTVPQVF
101: INGKHLGGSD DTVDAYESGE LAKLLGVSGN KEAEL

Arabidopsis Description

GRXC4Glutaredoxin-C4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFQ6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.