Factsheet for Solyc11g069860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020793	Potato	endoplasmic reticulum, extracellular	90.91	90.91
HORVU7Hr1G009480.1	Barley	cytosol	21.68	70.45
Os06t0659500-01	Rice	cytosol, plasma membrane	36.36	67.53
HORVU7Hr1G110720.1	Barley	cytosol	39.16	67.47
VIT_11s0052g00500.t01	Wine grape	endoplasmic reticulum, extracellular	60.84	63.97
GSMUA_Achr7P04990_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.94	63.49
HORVU3Hr1G028600.1	Barley	cytosol	27.97	63.49
CDX92459	Canola	endoplasmic reticulum, golgi	57.34	63.08
AT5G20500.1	Thale cress	endoplasmic reticulum	59.44	62.96
Bra020106.1-P	Field mustard	endoplasmic reticulum	58.04	62.41
Bra002306.1-P	Field mustard	golgi	57.34	62.12
CDY16539	Canola	endoplasmic reticulum	56.64	61.36
KRH37371	Soybean	endoplasmic reticulum	55.24	59.4
KRH12368	Soybean	endoplasmic reticulum	55.24	58.96
GSMUA_Achr1P10400_001	Banana	plastid	53.15	57.58
TraesCS7B01G404000.1	Wheat	mitochondrion, plastid	53.15	56.3
TraesCS7D01G480900.1	Wheat	mitochondrion, plastid	51.75	54.81
TraesCS7A01G493400.1	Wheat	mitochondrion, plastid	51.75	54.81
Zm00001d046900_P003	Maize	mitochondrion	51.05	54.07
EER88767	Sorghum	mitochondrion	51.05	54.07
HORVU7Hr1G110810.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	51.05	53.28
CDY45086	Canola	endoplasmic reticulum	52.45	40.76
Solyc06g005260.2.1	Tomato	extracellular	30.77	40.74
GSMUA_Achr1P23530_001	Banana	extracellular	38.46	40.15
Solyc03g112770.2.1	Tomato	plastid	27.97	32.0
Solyc02g084660.2.1	Tomato	mitochondrion	44.06	28.0
Solyc06g083690.2.1	Tomato	plastid	31.47	24.59

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	InterPro:GLR_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005783	GO:GO:0005794
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:Glutaredoxin_euk/vir
InterPro:Glutaredoxin_subgr	InterPro:IPR002109	UniProt:K4DAE2	PFAM:PF00462	PRINTS:PR00160	ScanProsite:PS00195
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF116	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc11g069860.1	EnsemblPlants:Solyc11g069860.1.1
TIGRFAMs:TIGR02180	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	UniParc:UPI00027693E1	SEG:seg	:

Description

Glutaredoxin-C4 [Source:Projected from Arabidopsis thaliana (AT5G20500) UniProtKB/Swiss-Prot;Acc:Q8LFQ6]

Coordinates

chr11:+:54483125..54487540

Molecular Weight (calculated)

15405.3 Da

IEP (calculated)

6.782

GRAVY (calculated)

-0.007

Length

143 amino acids

Sequence
(BLAST)

001: MAKSAAFSNS TSLSSIPILL IIVSVTVLLY ASTVAGGGDS SAFVKKTISS HSIVIFSKSY CPYCKKAKAV FRELNQKPHV VELDERDDGW NIQDAISEIV
101: GRRTVPQVFI NGKHIGGSDD TIEAYENGDL AKLLGVNSKN DDL

Best Arabidopsis Sequence Match ( AT5G20500.1 )
(BLAST)

001: MTMFRSISMV MLLVALVTFI SMVSSAASSP EADFVKKTIS SHKIVIFSKS YCPYCKKAKS VFRELDQVPY VVELDEREDG WSIQTALGEI VGRRTVPQVF
101: INGKHLGGSD DTVDAYESGE LAKLLGVSGN KEAEL

Arabidopsis Description

GRXC4Glutaredoxin-C4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFQ6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.